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    CG6276 [ Drosophila melanogaster ]

    Gene ID: 41855, updated on 9-May-2012
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    Summary

    Official Symbol
    CG6276provided by Flybase
    Primary source
    FLYBASE:FBgn0038316
    Locus tag
    Dmel_CG6276
    Gene type
    protein coding
    RNA name
    CG6276
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6276
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    Genomic context

    Location :
    88F1-88F1
    Sequence :
    Chromosome: 3R; NT_033777.2 (11143924..11145768, complement)
    See CG6276 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene Tropomyosin 1 Neighboring gene Tropomyosin 2 Neighboring gene CG14866 gene product from transcript CG14866-RA Neighboring gene ENL/AF9-related Neighboring gene CG6236 gene product from transcript CG6236-RB

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:66919 BioGRID:59015 CG13001    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:65239 CG13733    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:68044 CG14546    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:58219 CG2278    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:67319 CG3517    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:61068 CG5674    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:67535 CG6569    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:65440 CG7757    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:59785 CG8851    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:67757 Pli    BioGRID  PubMed Two-hybrid 
    BioGRID:66919 BioGRID:58076 dx    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG6276 gene product from transcript CG6276-RA
    Names
    CG6276
    CG6276-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      11143924..11145768, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142188.2 → NP_650445.3  CG6276 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VF93
      Related
      FBpp0082577, FBtr0083123
      Conserved Domains (2) summary
      pfam02944
      Location:430 – 466
      Blast Score: 117
      BESS; BESS motif
      cl15779
      Location:32 – 116
      Blast Score: 216
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY069510.1 AAL39655.1
    genomic AE014297.2 AAF55167.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VF93.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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