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VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) [ Gallus gallus (chicken) ]

Gene ID: 418273, updated on 3-Apr-2024

Summary

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Symbol
VAMP1provided by CGNC
Full Name
vesicle-associated membrane protein 1 (synaptobrevin 1)provided by CGNC
Primary source
CGNC:50722
See related
Ensembl:ENSGALG00010021801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (76837153..76867412, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (77037089..77067487, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 162 member A Neighboring gene karyopherin subunit alpha 1 Neighboring gene F-box protein 40 Neighboring gene TAP binding protein like Neighboring gene microRNA 6553 Neighboring gene sodium channel epithelial 1 alpha subunit Neighboring gene small nucleolar RNA U85 Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene non-SMC condensin I complex subunit D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SNARE complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039486.2 → NP_001034575.1  vesicle-associated membrane protein 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000015
    UniProtKB/TrEMBL
    F1NH94
    Related
    ENSGALP00010031946.1, ENSGALT00010053041.1
    Conserved Domains (1) summary
    cd15870
    Location:33 → 95
    R-SNARE_VAMP2; SNARE motif of VAMP2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    76837153..76867412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046939678.1 → XP_046795634.1  vesicle-associated membrane protein 1 isoform X1

  2. XM_046939685.1 → XP_046795641.1  vesicle-associated membrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZMB2

  3. XM_015293316.4 → XP_015148802.1  vesicle-associated membrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZMB2, A0A8V0ZT10
    Related
    ENSGALP00010031949.1, ENSGALT00010053046.1
    Conserved Domains (1) summary
    cd15870
    Location:33 → 95
    R-SNARE_VAMP2; SNARE motif of VAMP2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    77037089..77067487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907741.1 → XP_046763697.1  vesicle-associated membrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZMB2

RNA

  1. XR_006932677.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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