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FERMT1 fermitin family member 1 [ Gallus gallus (chicken) ]

Gene ID: 416727, updated on 3-Apr-2024

Summary

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Official Symbol
FERMT1provided by CGNC
Official Full Name
fermitin family member 1provided by CGNC
Primary source
CGNC:6699
See related
Ensembl:ENSGALG00010018512
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C20orf42
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (14990187..15011998)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (14904735..14927258)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 2 Neighboring gene uncharacterized LOC121110386 Neighboring gene uncharacterized LOC124417872 Neighboring gene leucine rich repeat neuronal 4 Neighboring gene family with sequence similarity 161 member A Neighboring gene chaperonin containing TCP1 subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fermitin family homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14990187..15011998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040698211.2 → XP_040554145.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (6) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
    pfam00373
    Location:526 → 570
    FERM_M; FERM central domain

  2. XM_046939529.1 → XP_046795485.1  fermitin family homolog 1 isoform X2

  3. XM_025148982.3 → XP_025004750.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (6) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
    pfam00373
    Location:526 → 570
    FERM_M; FERM central domain

  4. XM_415024.8 → XP_415024.2  fermitin family homolog 1 isoform X2

    See identical proteins and their annotated locations for XP_415024.2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Related
    ENSGALP00010026713.1, ENSGALT00010044791.1
    Conserved Domains (6) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
    pfam00373
    Location:526 → 570
    FERM_M; FERM central domain

  5. XM_046939530.1 → XP_046795486.1  fermitin family homolog 1 isoform X2

  6. XM_004935248.5 → XP_004935305.1  fermitin family homolog 1 isoform X2

    See identical proteins and their annotated locations for XP_004935305.1

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (6) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)
    pfam00373
    Location:526 → 570
    FERM_M; FERM central domain

  7. XM_046939528.1 → XP_046795484.1  fermitin family homolog 1 isoform X1

  8. XM_046939531.1 → XP_046795487.1  fermitin family homolog 1 isoform X2

RNA

  1. XR_005858777.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14904735..14927258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040668039.2 → XP_040523973.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (5) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

  2. XM_046915033.1 → XP_046770989.1  fermitin family homolog 1 isoform X2

  3. XM_040668040.2 → XP_040523974.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (5) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

  4. XM_040668041.2 → XP_040523975.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (5) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

  5. XM_046915034.1 → XP_046770990.1  fermitin family homolog 1 isoform X2

  6. XM_040668038.2 → XP_040523972.1  fermitin family homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z6Y7
    Conserved Domains (5) summary
    smart00295
    Location:250 → 337
    B41; Band 4.1 homologues
    cd01237
    Location:370 → 494
    PH_fermitin; Fermitin family pleckstrin homology (PH) domain
    cd13205
    Location:564 → 655
    FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
    cd17180
    Location:11 → 94
    FERM_F0_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in kindlin-1 (KIND1)
    cd17183
    Location:95 → 275
    FERM_F1_KIND1; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in kindlin-1 (KIND1)

  7. XM_046915032.1 → XP_046770988.1  fermitin family homolog 1 isoform X1

  8. XM_046915035.1 → XP_046770991.1  fermitin family homolog 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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