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    DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [ Gallus gallus (chicken) ]

    Gene ID: 415875, updated on 4-May-2013
    Symbol
    DHX38provided by CGNC
    Full Name
    DEAH (Asp-Glu-Ala-His) box polypeptide 38provided by CGNC
    Primary source
    CGNC:504
    Locus tag
    RCJMB04_6i5
    See related
    Ensembl:ENSGALG00000000787
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus
    Location :
    chromosome: 11
    Sequence :
    Chromosome: 11; NC_006098.3 (19150949..19161411, complement)
    See DHX38 in MapViewer

    Chromosome 11 - NC_006098.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC415873 Neighboring gene uncharacterized LOC100857777 Neighboring gene polyamine modulated factor 1 binding protein 1 Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene increased sodium tolerance 1 homolog (yeast)

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098.

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • Spliceosome, organism-specific biosystem (from KEGG)
      Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, conserved biosystem (from KEGG)
      Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...

    Genotypes

    Homology

    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
    Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
    NP_001025753.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030582.1 → NP_001025753.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

      Status: PROVISIONAL

      Source sequence(s)
      AJ719786
      UniProtKB/TrEMBL
      Q5ZLE8
      Related
      ENSGALP00000037931, ENSGALT00000038723
      Conserved Domains (5) summary
      cd00046
      Location:554 – 690
      Blast Score: 246
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:722 – 824
      Blast Score: 98
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam04408
      Location:925 – 1015
      Blast Score: 352
      HA2; Helicase associated domain (HA2)
      pfam07717
      Location:1049 – 1151
      Blast Score: 327
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
      smart00487
      Location:529 – 716
      Blast Score: 284
      DEXDc; DEAD-like helicases superfamily

    RefSeqs of Annotated Genomes: Build 3.1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gallus_gallus-4.0 Primary Assembly

    Genomic

    1. NC_006098.3 Reference Gallus_gallus-4.0 Primary Assembly

      Range
      19150949..19161411, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    genomic AADN03006230.1 (12894..23356) None
    mRNA AJ719786.1 CAG31445.1 Leghorn
    mRNA BX935664.1 None Leghorn

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubChem Compound
        PubChem Compounds
      • PubChem Substance
        PubChem Substances
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • SNP
        Related SNP records
      • SNP: GeneView
        SNPs linked from GeneView
      • SNP: Genotype
        Gene Genotype Report
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).

      Links to other resources

      General information

      Related sites

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