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THBS2 thrombospondin 2 [ Gallus gallus (chicken) ]

Gene ID: 414837, updated on 5-Mar-2024

Summary

Symbol
THBS2provided by CGNC
Full Name
thrombospondin 2provided by CGNC
Primary source
CGNC:49928
See related
Ensembl:ENSGALG00010004760
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
thrombospondin-2
Orthologs
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Genomic context

Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (41028074..41060583)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (40924523..40956809)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418347 Neighboring gene uncharacterized LOC107053043 Neighboring gene uncharacterized LOC121110377 Neighboring gene uncharacterized LOC107053042 Neighboring gene SPARC related modular calcium binding 2 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397325.1NP_001384254.1  thrombospondin-2 precursor

    Status: VALIDATED

    Source sequence(s)
    BU218896, BU256559, BU326540, BU355322, BU399831, JAENSL010000081, M60853
    UniProtKB/Swiss-Prot
    P35440
    Related
    ENSGALP00010006304.1, ENSGALT00010011074.1
    Conserved Domains (7) summary
    smart00209
    Location:507559
    TSP1; Thrombospondin type 1 repeats
    sd00001
    Location:857894
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:799833
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:703738
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00093
    Location:330384
    VWC; von Willebrand factor type C domain
    pfam02412
    Location:857894
    TSP_3; Thrombospondin type 3 repeat
    cl22861
    Location:37225
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    41028074..41060583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    40924523..40956809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001755.1: Suppressed sequence

    Description
    NM_001001755.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.