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    CG18476 [ Drosophila melanogaster ]

    Gene ID: 41404, updated on 9-May-2012
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    Summary

    Official Symbol
    CG18476provided by Flybase
    Primary source
    FLYBASE:FBgn0037931
    Locus tag
    Dmel_CG18476
    Gene type
    protein coding
    RNA name
    CG18476
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG17822; Dmel\CG18476
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    Genomic context

    Location :
    86E15-86E15
    Sequence :
    Chromosome: 3R; NT_033777.2 (7500642..7503835, complement)
    See CG18476 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene Elongator complex protein 1 Neighboring gene CG42327 gene product from transcript CG42327-RE Neighboring gene CG14715 gene product from transcript CG14715-RA Neighboring gene TBP-associated factor 12 Neighboring gene CG6830 gene product from transcript CG6830-RA Neighboring gene Heme oxygenase

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Hoskins RA, et al. Nucleic Acids Res, 2005 Dec 2. PMID 16326860.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747.

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:66531 BioGRID:58427 Ant2    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:59980 CG8965    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:68286 Doa    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:59275 Mer    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:66481 RpL3    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:60697 aret    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:61832 dap    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:61072 elfless    BioGRID  PubMed Two-hybrid 
    BioGRID:66531 BioGRID:58426 sesB    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG18476 gene product from transcript CG18476-RA
    Names
    CG18476
    CG18476-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      7500642..7503835, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_169419.2 → NP_731615.1  CG18476 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VGK1
      Related
      FBpp0081919
      Conserved Domains (2) summary
      pfam13465
      Location:830 – 855
      Blast Score: 90
      zf-H2C2_2; Zinc-finger double domain
      cl07874
      Location:6 – 84
      Blast Score: 89
      zf-AD; Zinc-finger associated domain (zf-AD)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT050458.1 ACJ13165.1
    mRNA BT023708.1 AAY85108.1
    genomic AE014297.2 AAF54675.1
    mRNA BT016102.1 AAV36987.1
    mRNA BT022176.2 AAY51570.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VGK1.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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