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LOC413439 single-strand selective monofunctional uracil DNA glycosylase [ Apis mellifera (honey bee) ]

Gene ID: 413439, updated on 9-Nov-2023

Summary

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Gene symbol
LOC413439
Gene description
single-strand selective monofunctional uracil DNA glycosylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB42086
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Genomic context

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Location:
chromosome: LG5
Exon count:
3
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG5 NC_037642.1 (7438117..7439434)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG5 NC_007074.3 (7338853..7340628)

Linkage Group LG5 - NC_037642.1Genomic Context describing neighboring genes Neighboring gene RNA helicase aquarius Neighboring gene probable G-protein coupled receptor Mth-like 1 Neighboring gene probable G-protein coupled receptor Mth-like 5 Neighboring gene tRNA-specific adenosine deaminase 2 Neighboring gene tubulin polyglutamylase TTLL7 Neighboring gene 40S ribosomal protein S29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand selective uracil DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-strand selective monofunctional uracil DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037642.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    7438117..7439434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006564215.2 → XP_006564278.1  single-strand selective monofunctional uracil DNA glycosylase

    UniProtKB/TrEMBL
    A0A7M7LNB9, A0A8B6YZG9
    Conserved Domains (1) summary
    cl00483
    Location:52 → 283
    UDG_like; Uracil-DNA glycosylases (UDG) and related enzymes
Nucleotide Protein Strain
Heading Accession and Version

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