My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    CG6621 [ Drosophila melanogaster ]

    Gene ID: 41319, updated on 9-May-2012
    Help top of page

    Summary

    Official Symbol
    CG6621provided by Flybase
    Primary source
    FLYBASE:FBgn0037855
    Locus tag
    Dmel_CG6621
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6621
    Help top of page

    Genomic context

    Location :
    86C7-86C7
    Sequence :
    Chromosome: 3R; NT_033777.2 (6715490..6719252, complement)
    See CG6621 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG14696 gene product from transcript CG14696-RA Neighboring gene CG4674 gene product from transcript CG4674-RA Neighboring gene Adenylate kinase-3 Neighboring gene CG4683 gene product from transcript CG4683-RA Neighboring gene CG34114 gene product from transcript CG34114-RB

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (9) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:66462 BioGRID:77171 CG31680    BioGRID  PubMed Two-hybrid 
    BioGRID:66462 BioGRID:67212 CG7146    BioGRID  PubMed Two-hybrid 
    BioGRID:66462 BioGRID:64890 CG9007    BioGRID  PubMed Two-hybrid 
    BioGRID:66462 BioGRID:66481 RpL3    BioGRID  PubMed Two-hybrid 
    Help top of page

    General gene information

    Homology

    • Homologs of the CG6621 gene: The CG6621 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, and mosquito.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
    Help top of page

    General protein information

    Preferred Names
    CG6621 gene product from transcript CG6621-RB
    Names
    CG6621
    CG6621-PA
    CG6621-PB
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      6715490..6719252, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202281.1 → NP_001189210.1  CG6621, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      Conserved Domains (2) summary
      cd00189
      Location:309 – 408
      Blast Score: 145
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam13414
      Location:334 – 408
      Blast Score: 97
      TPR_11; TPR repeat

    2. NM_141779.2 → NP_650036.2  CG6621, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VGU5
      Related
      FBpp0081805, FBtr0082329
      Conserved Domains (2) summary
      cd00189
      Location:309 – 408
      Blast Score: 145
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam13414
      Location:334 – 408
      Blast Score: 97
      TPR_11; TPR repeat
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014297.2 ADV37301.1
    genomic AE014297.2 AAF54579.2
    mRNA BT044217.1 ACH92282.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    AAF54579.1 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

      Supplemental Content