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Sala_0290 ATP-dependent DNA ligase [ Sphingopyxis alaskensis RB2256 ]

Gene ID: 4082650, updated on 12-Apr-2014
Gene symbol
Sala_0290
Gene description
ATP-dependent DNA ligase
Locus tag
Sala_0290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sphingopyxis alaskensis RB2256 (strain: RB2256)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis
Sequence:
NC_008048.1 (287765..289417)

NC_008048.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator Neighboring gene signal transduction histidine kinase Neighboring gene putative mRNA 3-end processing factor Neighboring gene superoxide dismutase Neighboring gene L-serine dehydratase 1

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
ATP-dependent DNA ligase
YP_615346.1
  • catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008048.1 

    Range
    287765..289417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_615346.1 ATP-dependent DNA ligase [Sphingopyxis alaskensis RB2256]

    See proteins identical to YP_615346.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q1GWF9
    Conserved Domains (4) summary
    cd07972
    Location:428547
    OBF_DNA_ligase_Arch_LigB; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit
    cd07897
    Location:227427
    Adenylation_DNA_ligase_Bac1; Adenylation domain of putative bacterial ATP-dependent DNA ligases
    TIGR04120
    Location:2549
    DNA_lig_bact; DNA ligase, ATP-dependent, PP_1105 family
    pfam04675
    Location:2185
    DNA_ligase_A_N; DNA ligase N terminus