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    CG6049 [ Drosophila melanogaster ]

    Gene ID: 40369, updated on 9-May-2012
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    Summary

    Official Symbol
    CG6049provided by Flybase
    Primary source
    FLYBASE:FBgn0037081
    Locus tag
    Dmel_CG6049
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg6049; cus2; Dmel\CG6049; Tat-SF1
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    Genomic context

    Location :
    78D1-78D2
    Sequence :
    Chromosome: 3L; NT_037436.3 (21413483..21426267, complement)
    See CG6049 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG32440 gene product from transcript CG32440-RA Neighboring gene regeneration Neighboring gene spermatocyte arrest Neighboring gene CG33288 gene product from transcript CG33288-RC Neighboring gene Adult enhancer factor 1 Neighboring gene CG5664 gene product from transcript CG5664-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Drosophila MFAP1 is required for pre-mRNA processing and G2/M progression. Andersen DS, et al. J Biol Chem, 2008 Nov 7. PMID 18765666.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:65616 BioGRID:64024 CG15022    BioGRID  PubMed Two-hybrid 
    BioGRID:65616 BioGRID:66647 CG18616    BioGRID  PubMed Two-hybrid 
    BioGRID:65616 BioGRID:65767 CG9776    BioGRID  PubMed Two-hybrid 
    BioGRID:65616 BioGRID:66612 GstD1    BioGRID  PubMed Two-hybrid 
    BioGRID:65616 BioGRID:68014 RpL27    BioGRID  PubMed Two-hybrid 
    BioGRID:65616 BioGRID:62039 wal    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    neurogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		  
    neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    		  
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    General protein information

    Preferred Names
    CG6049 gene product from transcript CG6049-RC
    Names
    CG6049
    CG6049-PA
    CG6049-PB
    CG6049-PC
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      21413483..21426267, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_168902.2 → NP_730629.1  CG6049, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K204
      Related
      FBpp0078053, FBtr0078399
      Conserved Domains (1) summary
      cd00590
      Location:285 – 366
      Blast Score: 135
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...

    2. NM_141056.3 → NP_649313.1  CG6049, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K204
      Related
      FBpp0078054, FBtr0078400
      Conserved Domains (1) summary
      cd00590
      Location:285 – 366
      Blast Score: 135
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...

    3. NM_168901.2 → NP_730628.1  CG6049, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K204
      Related
      FBpp0078052, FBtr0078398
      Conserved Domains (1) summary
      cd00590
      Location:285 – 366
      Blast Score: 135
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY061345.1 AAL28893.1
    genomic AE014296.4 AAN12166.1
    genomic HH769936.1 CBX85687.1
    genomic AE014296.4 AAN12167.1
    genomic AE014296.4 AAF51719.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VP38.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content