Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    LRP2 low density lipoprotein receptor-related protein 2 [ Homo sapiens (human) ]

    Gene ID: 4036, updated on 18-May-2013
    Official Symbol
    LRP2provided by HGNC
    Official Full Name
    low density lipoprotein receptor-related protein 2provided by HGNC
    Primary source
    HGNC:6694
    See related
    Ensembl:ENSG00000081479; HPRD:02509; MIM:600073; Vega:OTTHUMG00000132179
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DBS; GP330
    Summary
    The protein encoded by this gene, low density lipoprotein-related protein 2 (LRP2) or megalin, is a multi-ligand endocytic receptor that is expressed in many different tissues but primarily in absorptive epithilial tissues such as the kidney. This glycoprotein has a large amino-terminal extracellular domain, a single transmembrane domain, and a short carboxy-terminal cytoplasmic tail. The extracellular ligand-binding-domains bind diverse macromolecules including albumin, apolipoproteins B and E, and lipoprotein lipase. The LRP2 protein is critical for the reuptake of numerous ligands, including lipoproteins, sterols, vitamin-binding proteins, and hormones. This protein also has a role in cell-signaling; extracellular ligands include parathyroid horomones and the morphogen sonic hedgehog while cytosolic ligands include MAP kinase scaffold proteins and JNK interacting proteins. Recycling of this membrane receptor is regulated by phosphorylation of its cytoplasmic domain. Mutations in this gene cause Donnai-Barrow syndrome (DBS) and facio-oculoacoustico-renal syndrome (FOAR).[provided by RefSeq, Aug 2009]
    Location :
    2q24-q31
    Sequence :
    Chromosome: 2; NC_000002.11 (169983619..170219122, complement)
    See LRP2 in Epigenomics, MapViewer

    Chromosome 2 - NC_000002.11Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase (SDR family) member 9 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1 pseudogene 6 Neighboring gene Bardet-Biedl syndrome 5 Neighboring gene kelch-like family member 41

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Donnai Barrow syndrome

    Summary from GeneReviews: Donnai-Barrow Syndrome Go to GeneReviews

    Disease Characteristics
    Donnai-Barrow syndrome (DBS) is characterized by typical craniofacial features (ocular hypertelorism, enlarged fontanelle), ocular findings (high myopia, retinal detachment, progressive vision loss, and iris coloboma), sensorineural hearing loss, agenesis of the corpus callosum, intellectual disability, and congenital diaphragmatic hernia (CDH) and/or omphalocele. Both inter- and intrafamilial phenotypic variability are observed.
    Diagnosis Testing
    The diagnosis of DBS is based on the combination of characteristic clinical features and a distinctive pattern of low-molecular-weight proteinuria. LRP2, encoding the protein low-density lipoprotein receptor-related protein 2 precursor (megalin), is the only gene known to be associated with DBS. Molecular genetic testing is available clinically and on a research basis.
    Genetic Counseling
    DBS is inherited in an autosomal recessive manner. In general, the parents of an affected child are obligate heterozygotes with each carrying one mutant allele; one instance of uniparental disomy has been reported. When both parents are known to be mutation carriers, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier detection for at-risk relatives and prenatal testing of pregnancies at increased risk may be possible through laboratories offering custom mutation testing if both mutations in a family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P98164 P02768 ALB    HPRD  PubMed  
    P98164 Q9H9E1 ANKRA2    HPRD  PubMed  
    P98164 E2a-Pbx1 associated protein ANKS1B    HPRD  PubMed  
    P98164 Q99767 APBA2    HPRD  PubMed  
    P98164 O00213 APBB1    HPRD  PubMed  
    P98164 P04114 APOB    HPRD  PubMed  
    P98164 P02649 APOE    HPRD  PubMed  
    P98164 P02749 APOH    HPRD  PubMed  
    P98164 P54259 ATN1    HPRD  PubMed  
    P98164 P10909 CLU    HPRD  PubMed  
    P98164 O60494 CUBN    HPRD  PubMed  
    P98164 O75553 DAB1    HPRD  PubMed  
    P98164 P98082 DAB2    HPRD  PubMed  
    P98164 Q12959 DLG1    HPRD  PubMed  
    P98164 Q15700 DLG2    HPRD  PubMed  
    P98164 Q92796 DLG3    HPRD  PubMed  
    P98164 P78352 DLG4    HPRD  PubMed  
    P98164 P02774 GC    HPRD  PubMed  
    P98164 O14908 GIPC1    HPRD  PubMed  
    P98164 Q5JY77 GPRASP1    HPRD  PubMed  
    P98164 P01308 INS    HPRD  PubMed  
    P98164 O14713 ITGB1BP1    HPRD  PubMed  
    P98164 P80188 LCN2    HPRD  PubMed  
    P98164 Q5SW96 LDLRAP1    HPRD  PubMed  
    P98164 P08519 LPA    HPRD  PubMed  
    P98164 P06858 LPL    HPRD  PubMed  
    P98164 P98164 LRP2    HPRD  PubMed  
    P98164 Megalin binding protein LRP2BP    HPRD  PubMed  
    P98164 P30533 LRPAP1    HPRD  PubMed  
    P98164 Q96QZ7 MAGI1    HPRD  PubMed  
    P98164 Q9UQF2 MAPK8IP1    HPRD  PubMed  
    P98164 Q13387 MAPK8IP2    HPRD  PubMed  
    P98164 P21741 MDK    HPRD  PubMed  
    P98164 O75052 NOS1AP    HPRD  PubMed  
    P98164 O60331 PIP5K1C    HPRD  PubMed  
    P98164 P00749 PLAU    HPRD  PubMed  
    P98164 P09455 RBP1    HPRD  PubMed  
    P98164 P11684 SCGB1A1    HPRD  PubMed  
    P98164 P05121 SERPINE1    HPRD  PubMed  
    P98164 P48764 SLC9A3    HPRD  PubMed  
    P98164 P57105 SYNJ2BP    HPRD  PubMed  
    P98164 P01266 TG    HPRD  PubMed  
    P98164 Q9Y490 TLN1    HPRD  PubMed  
    P98164 P02766 TTR    HPRD  PubMed  
    BioGRID:110216 BioGRID:158123 ALB    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:115665 ANAPC10    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:121758 ANKRA2    BioGRID  PubMed Affinity Capture-Western; Co-crystal Structure; Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:121229 ANKS1B    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:106818 APBA2    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:106845 APOE    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:106847 APOH    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:108156 ATN1    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:107603 CLU    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:107970 DAB1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:107971 DAB2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:108084 DLG2    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:108085 DLG3    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:108086 DLG4    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:108908 GC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110216 BioGRID:115978 GIPC1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:114689 ITGB1BP1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:117561 LDLRAP1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:110202 LPA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:110205 LPL    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:120916 LRP2BP    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:110221 LRPAP1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:114655 MAGI1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:114864 MAPK8IP1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:117086 MAPK8IP2    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:115071 NOS1AP    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:111344 PLAU    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:111881 RBP1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:113203 SCGB1A1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:112233 SCN3A    BioGRID  PubMed Two-hybrid 
    BioGRID:110216 BioGRID:115128 SNX17    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110216 BioGRID:120614 SYNJ2BP    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110216 BioGRID:112915 THBS1    BioGRID  PubMed Reconstituted Complex 
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • Diseases associated with visual transduction, organism-specific biosystem (from REACTOME)
      Diseases associated with visual transduction, organism-specific biosystemThe process of vision involves two stages; the retinoid cycle which supplies and regenerates the visual chromophore required for vision and phototransduction which propagates the light signal. Defect...
    • Hedgehog signaling pathway, organism-specific biosystem (from KEGG)
      Hedgehog signaling pathway, organism-specific biosystemThe Hedgehog (Hh) family of secreted signaling proteins plays a crucial role in development of diverse animal phyla, from Drosophila to humans, regulating morphogenesis of a variety of tissues and or...
    • Hedgehog signaling pathway, conserved biosystem (from KEGG)
      Hedgehog signaling pathway, conserved biosystemThe Hedgehog (Hh) family of secreted signaling proteins plays a crucial role in development of diverse animal phyla, from Drosophila to humans, regulating morphogenesis of a variety of tissues and or...
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • Metabolism of lipids and lipoproteins, organism-specific biosystem (from REACTOME)
      Metabolism of lipids and lipoproteins, organism-specific biosystemLipids are hydrophobic but otherwise chemically diverse molecules that play a wide variety of roles in human biology. They include ketone bodies, fatty acids, triacylglycerols, phospholipids and sphi...
    • Metabolism of steroid hormones and vitamin D, organism-specific biosystem (from REACTOME)
      Metabolism of steroid hormones and vitamin D, organism-specific biosystemSteroid hormones are synthesized primarily in the adrenal gland and gonads. They regulate energy metabolism and stress responses (glucocorticoids), salt balance (mineralocorticoids), and sexual devel...
    • Retinoid metabolism and transport, organism-specific biosystem (from REACTOME)
      Retinoid metabolism and transport, organism-specific biosystemVitamin A (all-trans-retinol) must be taken up, either as carotenes from plants, or as retinyl esters from animal food. The most prominent carotenes are alpha-carotene, lycopene, lutein, beta-cryptox...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling events mediated by the Hedgehog family, organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by the Hedgehog family, organism-specific biosystem
      Signaling events mediated by the Hedgehog family
    • Visual phototransduction, organism-specific biosystem (from REACTOME)
      Visual phototransduction, organism-specific biosystemVisual phototransduction is the process by which photon absorption by visual pigment molecules in photoreceptor cells is converted to an electrical cellular response. The events in this process are p...
    • Vitamin D (calciferol) metabolism, organism-specific biosystem (from REACTOME)
      Vitamin D (calciferol) metabolism, organism-specific biosystemVitamin D3 (cholecalciferol) is a steroid hormone that plays a role in regulating calcium and bone metabolism. It is obtained from the diet and produced in the skin by photolysis of 7-dehydrocholeste...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    endocytosis TAS
    Traceable Author Statement
    more info
    PubMed 
    forebrain development IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    phototransduction, visible light TAS
    Traceable Author Statement
    more info
     
    protein glycosylation TAS
    Traceable Author Statement
    more info
    PubMed 
    receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
     
    retinoid metabolic process TAS
    Traceable Author Statement
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    steroid metabolic process TAS
    Traceable Author Statement
    more info
     
    vitamin D metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    apical plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    brush border membrane IEA
    Inferred from Electronic Annotation
    more info
     
    coated pit IEA
    Inferred from Electronic Annotation
    more info
     
    endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome TAS
    Traceable Author Statement
    more info
    PubMed 
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    low-density lipoprotein receptor-related protein 2
    Names
    low-density lipoprotein receptor-related protein 2
    LRP-2
    megalin
    glycoprotein 330
    calcium sensor protein
    Heymann nephritis antigen homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012634.1 RefSeqGene

      Range
      5001..240504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_004525.2NP_004516.2  low-density lipoprotein receptor-related protein 2 precursor

      Status: REVIEWED

      Source sequence(s)
      AC007556, AY265357, AY265358, CD673312, DA200673, DA339827, DA401915, U33837
      Consensus CDS
      CCDS2232.1
      UniProtKB/Swiss-Prot
      P98164
      UniProtKB/TrEMBL
      Q7Z5C0
      UniProtKB/TrEMBL
      Q7Z5C1
      Related
      ENSP00000263816, OTTHUMP00000163042, ENST00000263816, OTTHUMT00000255231
      Conserved Domains (8) summary
      cd00054
      Location:40074037
      Blast Score: 92
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00112
      Location:37593793
      Blast Score: 136
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      COG3391
      Location:20922288
      Blast Score: 151
      COG3391; Uncharacterized conserved protein [Function unknown]
      pfam07645
      Location:31523191
      Blast Score: 107
      EGF_CA; Calcium-binding EGF domain
      smart00135
      Location:15011543
      Blast Score: 146
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00192
      Location:13111344
      Blast Score: 91
      LDLa; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:33333374
      Blast Score: 136
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam12662
      Location:31323155
      Blast Score: 117
      cEGF; Complement Clr-like EGF-like

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000002.11 Reference GRCh37.p10 Primary Assembly

      Range
      169983619..170219122, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000134.1 Alternate HuRef

      Range
      161880497..162110457, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018913.1 Alternate CHM1_1.0

      Range
      169379036..169614549, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...