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ligD ATP-dependent DNA ligase [ Nitrobacter hamburgensis X14 ]

Gene ID: 4030083, discontinued on 4-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
ligD
Gene description
ATP-dependent DNA ligase
Locus tag
Nham_0448
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Nitrobacter hamburgensis X14 (strain: X14)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
Names
ATP-dependent DNA ligase
YP_575798.1
  • catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007964.1 Reference assembly

    Range
    493562..496162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_575798.1 ATP-dependent DNA ligase [Nitrobacter hamburgensis X14]

    Status: REVIEWED