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    C1orf226 chromosome 1 open reading frame 226 [ Homo sapiens (human) ]

    Gene ID: 400793, updated on 26-Feb-2013
    Official Symbol
    C1orf226provided by HGNC
    Official Full Name
    chromosome 1 open reading frame 226provided by HGNC
    Primary source
    HGNC:34351
    Locus tag
    hCG_2036738
    See related
    Ensembl:ENSG00000239887; Vega:OTTHUMG00000031376
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Location :
    1q23.3
    Sequence :
    Chromosome: 1; NC_000001.10 (162348696..162356608)
    See C1orf226 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 (neuronal) adaptor protein Neighboring gene microRNA 556 Neighboring gene chromosome 1 open reading frame 111 Neighboring gene SH2 domain containing 1B Neighboring gene SLAM family member 6 pseudogene 1

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039.
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932.
    3. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995.

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Review eQTL and phenotype association data in this region using PheGenI

    Markers

    Genotypes

    Potential readthrough

    Included gene: NOS1AP

    Homology

    Clone Names

    • FLJ13137, FLJ43132, FLJ55152
    Preferred Names
    uncharacterized protein C1orf226
    Names
    uncharacterized protein C1orf226

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085375.1 → NP_001078844.1  uncharacterized protein C1orf226 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences, compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus when it is compared to variant 1.
      Source sequence(s)
      AI480219, AK125122, AL512785
      Consensus CDS
      CCDS53422.1
      UniProtKB/Swiss-Prot
      A1L170
      Related
      ENSP00000437071, OTTHUMP00000228959, ENST00000458626, OTTHUMT00000076793

    2. NM_001135240.1 → NP_001128712.1  uncharacterized protein C1orf226 isoform 1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
      Source sequence(s)
      AK293907
      Consensus CDS
      CCDS44268.1
      UniProtKB/Swiss-Prot
      A1L170
      Related
      ENSP00000413150, OTTHUMP00000228958, ENST00000426197, OTTHUMT00000382767

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      162348696..162356608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      133593360..133601328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      168898540..168906452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    genomic ABBA01047306.1 (16143..17213) None
    genomic ABBA01047307.1 None
    genomic AL512785.7 (66082..74046) None
    genomic AMYH01001463.1 (781246..789158) None
    genomic CH471067.1 EAW90702.1
    mRNA AI480219.1 None
    mRNA AK023199.1 None
    mRNA AK125122.1 None
    mRNA AK293907.1 BAG57292.1
    mRNA BC127743.1 AAI27744.1
    mRNA BC127744.1 AAI27745.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L170.1 GenPept UniProtKB/Swiss-Prot:A1L170

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Medical
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • Order cDNA clone
        Order cDNA clone
      • BioAssay
        Related PubChem BioAssays
      • BioProjects
        BioProjects related to a gene
      • CCDS
        Links from Gene to CCDS are established if a gene encodes a protein sequence that is a member of a Consensus CDS (CCDS).
      • dbVar
        Link from Gene to dbVar
      • EST
        Link to related EST entry
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubChem Compound
        PubChem Compounds
      • PubChem Substance
        PubChem Substances
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • SNP
        Related SNP records
      • SNP: GeneView
        SNPs linked from GeneView
      • SNP: Genotype
        Gene Genotype Report
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).
      • UniSTS
        Related UniSTS records

      Links to other resources

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