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    Rbp6 RNA-binding protein 6 [ Drosophila melanogaster ]

    Gene ID: 39919, updated on 8-Jan-2012

    Summary

    Official Symbol
    Rbp6provided by Flybase
    Official Full Name
    RNA-binding protein 6provided by Flybase
    Primary source
    FLYBASE:FBgn0260943
    Locus tag
    Dmel_CG32169
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE25373; CG14055; CG14056; CG32169; CG6573; Dmel\CG32169; rrm6; RRM6

    Genomic context

    Location :
    73E5-74A1
    Sequence :
    Chromosome: 3L; NT_037436.3 (17058377..17231310, complement)
    See Rbp6 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG7725 gene product from transcript CG7725-RB Neighboring gene CG7724 gene product from transcript CG7724-RA Neighboring gene CG6512 gene product from transcript CG6512-RA Neighboring gene CG7707 gene product from transcript CG7707-RA

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:65211 BioGRID:67008 Akt1    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:64801 Atg1    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:66107 CG11286    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:57560 CG13373    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:61733 CG13745    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:72816 CG18754    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:61339 CG9248    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:62567 Cdk4    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:71396 CkIIalpha    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:63230 CycB    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:58898 CycD    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:68567 CycG    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:72482 CycK    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:61336 E2f2    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:64793 Klc    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:72726 RecQ4    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:68766 Sucb    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:58214 Traf6    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:67158 ald    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:64116 mad2    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:69325 plu    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:57644 png    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:62080 skpB    BioGRID  PubMed Two-hybrid 
    BioGRID:65211 BioGRID:60912 yuri    BioGRID  PubMed Two-hybrid 

    General gene information

    Markers

    Pathways from BioSystems

    • mRNA surveillance pathway, organism-specific biosystem (from KEGG)
      mRNA surveillance pathway, organism-specific biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...
    • mRNA surveillance pathway, conserved biosystem (from KEGG)
      mRNA surveillance pathway, conserved biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    mRNA binding NAS
    Non-traceable Author Statement
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CG32169 gene product from transcript CG32169-RC
    Names
    CG32169-PA
    CG32169-PB
    CG32169-PC
    CG32169-PD
    RNA-binding protein 6
    Rbp6-PA
    Rbp6-PB
    Rbp6-PC
    Rbp6-PD

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      17058377..17231310, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001104162.2NP_001097632.1  RNA-binding protein 6, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VVE5
      Related
      FBpp0112340, FBtr0113428
      Conserved Domains (2) summary
      cd00590
      Location:780
      Blast Score: 188
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01628
      Location:8159
      Blast Score: 109
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    2. NM_168718.2NP_730245.2  RNA-binding protein 6, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VVE5
      Related
      FBpp0075045, FBtr0075285
      Conserved Domains (1) summary
      cd00590
      Location:3099
      Blast Score: 190
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
    3. NM_001144489.1NP_001137961.1  RNA-binding protein 6, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z063
      Related
      FBpp0288505, FBtr0290066
      Conserved Domains (1) summary
      cd00590
      Location:780
      Blast Score: 179
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
    4. NM_001104161.1NP_001097631.1  RNA-binding protein 6, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VVE5
      Related
      FBpp0112339, FBtr0113427
      Conserved Domains (1) summary
      cd00590
      Location:3099
      Blast Score: 187
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 ABW08560.1
    genomic HB886947.1 CBF67630.1
    genomic AE014296.4 AAF49366.3
    mRNA AY122226.1 AAM52738.1
    genomic HC944356.1 CBU92504.1
    genomic AE014296.4 ACL83316.1
    genomic AE014296.4 ABW08559.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VVE5.3 GenPept

      Supplemental Content

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