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apoa4.S apolipoprotein A4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399000, updated on 11-Apr-2024

Summary

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Official Symbol
apoa4.S
Official Full Name
apolipoprotein A4 S homeolog
Primary source
Xenbase:XB-GENE-17334798
Locus tag
XELAEV_18037382mg
See related
EnsemblRapid:ENSXLAG00005008938
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 7S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (71676244..71678830)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (51475441..51478027, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene SIK family kinase 3 S homeolog Neighboring gene apolipoprotein A-I S homeolog Neighboring gene stabilizer of axonemal microtubules 1 Neighboring gene apolipoprotein A5 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68602

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylcholine binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylcholine-sterol O-acyltransferase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cholesterol efflux IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phospholipid efflux IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of intestinal cholesterol absorption IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within reverse cholesterol transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within triglyceride homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within very-low-density lipoprotein particle remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
  
part_of chylomicron IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC399000
Names
apolipoprotein A-IV

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090108.1 → NP_001083577.1  uncharacterized protein LOC399000 precursor

    See identical proteins and their annotated locations for NP_001083577.1

    Status: PREDICTED

    Source sequence(s)
    BC061667
    UniProtKB/TrEMBL
    Q6P7H6
    Related
    ENSXLAP00005025954.1, ENSXLAT00005026673.1
    Conserved Domains (2) summary
    pfam01442
    Location:66 → 234
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    cl19219
    Location:97 → 221
    DUF342; Protein of unknown function (DUF342)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    71676244..71678830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases