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tra transformer [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39849, updated on 8-Mar-2015
Official Symbol
traprovided by FlyBase
Official Full Name
transformerprovided by FlyBase
Primary source
FLYBASE:FBgn0003741
Locus tag
Dmel_CG16724
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG16724; Dmel\CG16724; Dmtra; Tra; TRA
See tra in MapViewer
Location:
73A10-73A10; 3-45 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.01 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16590059..16591050, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16583159..16584150, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene CG4169 gene product from transcript CG4169-RA Neighboring gene Syntaxin 8 Neighboring gene CG32163 gene product from transcript CG32163-RB Neighboring gene lethal (3) 73Ah Neighboring gene spindle defective 2 Neighboring gene CG32165 gene product from transcript CG32165-RC Neighboring gene pseudo

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
pre-mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA splicing TAS
Traceable Author Statement
more info
PubMed 
female sex determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
female sex differentiation IDA
Inferred from Direct Assay
more info
PubMed 
female somatic sex determination TAS
Traceable Author Statement
more info
PubMed 
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
mRNA splicing, via spliceosome NAS
Non-traceable Author Statement
more info
 
mRNA splicing, via spliceosome TAS
Traceable Author Statement
more info
PubMed 
male courtship behavior, veined wing generated song production IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of translation NAS
Non-traceable Author Statement
more info
PubMed 
sex determination TAS
Traceable Author Statement
more info
PubMed 
sex determination, primary response to X:A ratio NAS
Non-traceable Author Statement
more info
 
sex differentiation TAS
Traceable Author Statement
more info
PubMed 
somatic sex determination NAS
Non-traceable Author Statement
more info
PubMed 
spliceosomal complex assembly NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex NAS
Non-traceable Author Statement
more info
 
Preferred Names
CG16724 gene product from transcript CG16724-RA
Names
CG16724-PA
CG16724-PB
tra-PA
tra-PB
transformer

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    16590059..16591050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_079390.3NP_524114.1  transformer, isoform A [Drosophila melanogaster]

    See proteins identical to NP_524114.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P11596
    Related
    FBpp0075123, FBtr0075364
    Conserved Domains (1) summary
    pfam06495
    Location:3187
    Transformer; Fruit fly transformer protein
  2. NM_001014588.2NP_001014588.1  transformer, isoform B [Drosophila melanogaster]

    See proteins identical to NP_001014588.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q59E32
    Related
    FBpp0099630, FBtr0100244