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Phs Phaser [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39697, updated on 4-Apr-2024

Summary

Official Symbol
Phsprovided by FlyBase
Official Full Name
Phaserprovided by FlyBase
Primary source
FLYBASE:FBgn0036522
Locus tag
Dmel_CG7372
See related
AllianceGenome:FB:FBgn0036522
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG7372; Dmel\CG7372
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including embryonic brain; extended germ band embryo; gonad; and larval ventral nerve cord. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
71E3-71E4; 3-43 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (15619901..15624130)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (15613001..15617230)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein at 71E Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene comm3 Neighboring gene long non-coding RNA:CR45977 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
phaser
Names
CG7372-PA
Phs-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    15619901..15624130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140532.3NP_648789.3  phaser [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648789.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VUS0
    Related
    FBpp0075323
    Conserved Domains (5) summary
    COG5048
    Location:594787
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:715735
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:799816
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:713735
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:727750
    zf-H2C2_2; Zinc-finger double domain