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PRPH2 peripherin 2 (retinal degeneration, slow) [ Gallus gallus (chicken) ]

Gene ID: 395899, updated on 5-Jan-2016
Symbol
PRPH2provided by CGNC
Full Name
peripherin 2 (retinal degeneration, slow)provided by CGNC
Primary source
CGNC:49540
See related
Ensembl:ENSGALG00000009909
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RDS; CRDS1
Orthologs
See PRPH2 in MapViewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Gallus_gallus-5.0 (GCF_000002315.4) 3 NC_006090.4 (23085096..23094612, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 3 NC_006090.3 (22380707..22390223, complement)

Chromosome 3 - NC_006090.4Genomic Context describing neighboring genes Neighboring gene transcriptional regulating factor 1 Neighboring gene uncharacterized LOC107052940 Neighboring gene ubiquitin protein ligase E3 component n-recognin 2 Neighboring gene uncharacterized LOC107052938 Neighboring gene tubulin folding cofactor C

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
retina development in camera-type eye ISS
Inferred from Sequence or Structural Similarity
more info
 
visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
peripherin-2
Names
photoreceptor outer segment membrane glycoprotein 1
retinal degeneration slow protein
retinal degeneration, slow

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205038.1NP_990369.1  peripherin-2

    See identical proteins and their annotated locations for NP_990369.1

    Status: PROVISIONAL

    Source sequence(s)
    AF031238
    UniProtKB/Swiss-Prot
    O42281
    Related
    ENSGALP00000016098, ENSGALT00000016117
    Conserved Domains (2) summary
    cd03162
    Location:120262
    peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:20281
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gallus_gallus-5.0 Primary Assembly

Genomic

  1. NC_006090.4 Reference Gallus_gallus-5.0 Primary Assembly

    Range
    23085096..23094612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)