My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    Sox21b [ Drosophila melanogaster ]

    Gene ID: 39569, updated on 8-Jan-2012
    Help top of page

    Summary

    Official Symbol
    Sox21bprovided by Flybase
    Primary source
    FLYBASE:FBgn0042630
    Locus tag
    Dmel_CG32139
    Gene type
    protein coding
    RNA name
    Sox21b
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13483; CG32139; CG6419; Dmel\CG32139; Sox B2-2; SoxB2.2; SOXB2.2
    Help top of page

    Genomic context

    Location :
    70D2-70D2
    Sequence :
    Chromosome: 3L; NT_037436.3 (14105483..14124424, complement)
    See Sox21b in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene Fat body protein 1 Neighboring gene CG7345 gene product from transcript CG7345-RA Neighboring gene Dichaete Neighboring gene nanchung

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura. Macdonald SJ, et al. Genome Biol, 2006. PMID 16872532.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. Conserved genomic organisation of Group B Sox genes in insects. McKimmie C, et al. BMC Genet, 2005 May 19. PMID 15943880.

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64904 BioGRID:67008 Akt1    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:57560 CG13373    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:61707 CG14744    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:62567 Cdk4    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:68567 CycG    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:61336 E2f2    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:65629 SAK    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:67396 Sirt2    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:60206 cdc14    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:68673 nej    BioGRID  PubMed Two-hybrid 
    BioGRID:64904 BioGRID:61701 ptc    BioGRID  PubMed Two-hybrid 
    Help top of page

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    DNA binding, bending ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    sequence-specific DNA binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    regulation of transcription, DNA-dependent ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Help top of page

    General protein information

    Preferred Names
    CG32139 gene product from transcript CG32139-RA
    Names
    CG32139-PA
    Sox21b
    Sox21b-PA
    sox-like
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      14105483..14124424, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140438.2 → NP_648695.1  Sox21b [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VUD3
      Related
      FBpp0075489, FBtr0075747
      Conserved Domains (1) summary
      cd01388
      Location:247 – 318
      Blast Score: 283
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF49754.2
    mRNA AY058313.1 AAL13542.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VUD3.1 GenPept
    Help top of page

    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content