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    SNCF SoxNeuro Co-Factor [ Drosophila melanogaster ]

    Gene ID: 39496, updated on 8-Jan-2012
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    Summary

    Official Symbol
    SNCFprovided by Flybase
    Official Full Name
    SoxNeuro Co-Factorprovided by Flybase
    Primary source
    FLYBASE:FBgn0036349
    Locus tag
    Dmel_CG14112
    Gene type
    protein coding
    RNA name
    SoxNeuro Co-Factor
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE54375; CG14112; Dmel\CG14112; HL6
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    Genomic context

    Location :
    70A7-70A7
    Sequence :
    Chromosome: 3L; NT_037436.3 (13371685..13372299)
    See SNCF in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG17687 gene product from transcript CG17687-RA Neighboring gene Neuropeptide-like precursor 2 Neighboring gene CG14111 gene product from transcript CG14111-RA Neighboring gene CG14107 gene product from transcript CG14107-RA Neighboring gene Ecdysone-inducible gene L1

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Accentuate the negative: proteome comparisons using the negative proteome database. Reiter LT, et al. Fly (Austin), 2007 May-Jun. PMID 18820470.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Developmental control of nuclear morphogenesis and anchoring by charleston, identified in a functional genomic screen of Drosophila cellularisation. Pilot F, et al. Development, 2006 Feb. PMID 16421189.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64841 BioGRID:65056 Arf72A    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:58346 CG3099    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:66990 CG5478    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:62961 CG8929    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:59275 Mer    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:61322 RPA2    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:67455 Rlip    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:62568 RpLP2    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:64829 RpS4    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:59332 cactin    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:67680 cenB1A    BioGRID  PubMed Two-hybrid 
    BioGRID:64841 BioGRID:68659 toy    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    regulation of localization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG14112 gene product from transcript CG14112-RA
    Names
    CG14112-PA
    SNCF-PA
    SoxNeuro Co-Factor
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      13371685..13372299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140378.2 → NP_648635.1  SoxNeuro Co-Factor [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VU59
      Related
      FBpp0075576, FBtr0075840
      Conserved Domains (1) summary
      pfam05306
      Location:51 – 142
      Blast Score: 250
      DUF733; Protein of unknown function (DUF733)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF49831.1
    mRNA AY071463.1 AAL49085.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VU59.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content