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rps4x ribosomal protein S4 X-linked [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394507, updated on 5-Mar-2024

Summary

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Official Symbol
rps4xprovided by Xenbase
Official Full Name
ribosomal protein S4 X-linkedprovided by Xenbase
Primary source
Xenbase:XB-GENE-967201
See related
Ensembl:ENSXETG00000027073
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ccg2; rps4; scar; scr10; dxs306
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (39593426..39599047)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (18449862..18469618)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene liver-expressed antimicrobial peptide 2-like Neighboring gene bone morphogenetic protein 15 Neighboring gene NHS like 2 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC76320, MGC89809

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS4; 40S ribosomal protein S4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203581.3 → NP_988912.1  small ribosomal subunit protein eS4

    See identical proteins and their annotated locations for NP_988912.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077671
    UniProtKB/Swiss-Prot
    Q28HL4, Q6PBC4
    UniProtKB/TrEMBL
    A0A8J1IN17
    Related
    ENSXETP00000056755.2, ENSXETT00000056755.4
    Conserved Domains (1) summary
    PLN00036
    Location:1 → 260
    PLN00036; 40S ribosomal protein S4; Provisional

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    39593426..39599047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031890280.1 → XP_031746140.1  40S ribosomal protein S4 isoform X1

    UniProtKB/Swiss-Prot
    Q28HL4, Q6PBC4
    UniProtKB/TrEMBL
    A0A8J1IN17
    Related
    ENSXETP00000066377.1, ENSXETT00000105051.2
    Conserved Domains (1) summary
    PLN00036
    Location:1 → 260
    PLN00036; 40S ribosomal protein S4; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PBC4.3 GenPept UniProtKB/Swiss-Prot:Q6PBC4

Gene LinkOut

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