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    CG5642 [ Drosophila melanogaster ]

    Gene ID: 39386, updated on 10-May-2012
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    Summary

    Official Symbol
    CG5642provided by Flybase
    Primary source
    FLYBASE:FBgn0036258
    Locus tag
    Dmel_CG5642
    Gene type
    protein coding
    RNA name
    CG5642
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5642
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    Genomic context

    Location :
    68F6-68F6
    Sequence :
    Chromosome: 3L; NT_037436.3 (12136542..12139215, complement)
    See CG5642 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene lethal (3) neo18 Neighboring gene Autophagy-specific gene 12 Neighboring gene CG6811 gene product from transcript CG6811-RA Neighboring gene Neurexin IV Neighboring gene ebony activating protein Neighboring gene CG9760 gene product from transcript CG9760-RC

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573.
    2. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047.
    3. Heterotrimeric G proteins regulate a noncanonical function of septate junction proteins to maintain cardiac integrity in Drosophila. Yi P, et al. Dev Cell, 2008 Nov. PMID 19000835.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (13) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64740 BioGRID:63100 CG10306    BioGRID  PubMed Affinity Capture-MS; Two-hybrid 
    BioGRID:64740 BioGRID:65590 CG10510    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:61251 CG10664    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:66596 CG12256    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:64929 CG13474    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:63648 CG13900    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:533580 CG14425    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:62860 CG15109    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:60778 CG16826    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:61815 CG1814    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:68394 CG31038    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:77410 CG31743    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:65531 CG32425    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:62530 CG33017    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:67092 CG3590    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:66870 CG3731    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:78197 CG41099    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:59552 CG4785    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:62721 CG5033    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:67492 CG5892    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:67010 CG5903    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:61438 CG7856    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:57774 CG8636    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:64921 CG9238    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:65804 CG9769    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:62056 Ef1alpha48D    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:66611 GstD9    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:65176 Int6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:60591 Nup154    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:62137 Nup54    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:59266 Ranbp21    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:67703 RpS3    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:63374 TBPH    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:62316 Tango7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:69808 eIF-3p40    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:67727 eIF-3p66    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:65782 eIF3-S10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:62691 eIF3-S8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:62670 eIF3-S9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64740 BioGRID:58863 l(1)G0136    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:65410 l(3)76BDm    BioGRID  PubMed Two-hybrid 
    BioGRID:64740 BioGRID:60572 porin    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG5642 gene: The CG5642 gene is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, mosquito, C.elegans, , N.crassa, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG5642 gene product from transcript CG5642-RA
    Names
    CG5642
    CG5642-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      12136542..12139215, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140296.2 → NP_648553.1  CG5642 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VTU4
      Related
      FBpp0075754, FBtr0076022
      Conserved Domains (1) summary
      pfam10255
      Location:121 – 528
      Blast Score: 1451
      Paf67; RNA polymerase I-associated factor PAF67
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF49952.1
    mRNA AY089607.1 AAL90345.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VTU4.1 GenPept
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    Additional Links

    Gene LinkOut

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