U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

med30 mediator complex subunit 30 [ Danio rerio (zebrafish) ]

Gene ID: 393690, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
med30provided by ZNC
Official Full Name
mediator complex subunit 30provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1676
See related
Ensembl:ENSDARG00000101115 AllianceGenome:ZFIN:ZDB-GENE-040426-1676
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
thrap6; zgc:73113
Summary
Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED30 (mediator complex subunit 30). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (46372031..46411359)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (46779795..46819101)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1a (glutamate binding) Neighboring gene solute carrier family 30 member 8 Neighboring gene uncharacterized LOC110438132 Neighboring gene exostosin glycosyltransferase 1b Neighboring gene sterile alpha motif domain containing 12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus. Ju Z, et al. In Silico Biol, 2005. PMID 16268789
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC73113

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
mediator of RNA polymerase II transcription subunit 30
Names
thyroid hormone receptor associated protein 6
thyroid hormone receptor-associated protein 6 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200717.1 → NP_957011.1  mediator of RNA polymerase II transcription subunit 30

    See identical proteins and their annotated locations for NP_957011.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059478
    UniProtKB/Swiss-Prot
    Q6PC45
    Related
    ENSDARP00000134817.1, ENSDART00000163935.2
    Conserved Domains (1) summary
    pfam11315
    Location:24 → 172
    Med30; Mediator complex subunit 30

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    46372031..46411359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009294453.3 → XP_009292728.1  mediator of RNA polymerase II transcription subunit 30 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AKI7
    Conserved Domains (1) summary
    pfam11315
    Location:24 → 119
    Med30; Mediator complex subunit 30
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PC45.1 GenPept UniProtKB/Swiss-Prot:Q6PC45

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous