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mybpha myosin binding protein Ha [ Danio rerio (zebrafish) ]

Gene ID: 393530, updated on 27-Mar-2024

Summary

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Official Symbol
mybphaprovided by ZNC
Official Full Name
myosin binding protein Haprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1531
See related
Ensembl:ENSDARG00000058799 AllianceGenome:ZFIN:ZDB-GENE-040426-1531
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66097; zgc:85883; zgc:91966
Summary
Is expressed in hypaxial myotome region; musculature system; myotome; pectoral fin; and somite. Orthologous to several human genes including MYBPH (myosin binding protein H). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (6077503..6126003)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (6143531..6191904)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene neuron navigator 1-like Neighboring gene neuron navigator 1a Neighboring gene roundabout homolog 2-like Neighboring gene Fc receptor-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish foxc1a drives appendage-specific neural circuit development. Banerjee S, et al. Development, 2015 Feb 15. PMID 25670796, Free PMC Article
  2. The ATPase-dependent chaperoning activity of Hsp90a regulates thick filament formation and integration during skeletal muscle myofibrillogenesis. Hawkins TA, et al. Development, 2008 Mar. PMID 18256191, Free PMC Article
  3. Patterns of alternative splicing in response to cold acclimation in fish. Healy TM, et al. J Exp Biol, 2019 Mar 7. PMID 30692167
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC66097

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in sarcomere organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in M band IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
myosin binding protein Ha; uncharacterized protein LOC393530

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001331200.1 → NP_001318129.1  myosin binding protein Ha isoform 2

    Status: VALIDATED

    Source sequence(s)
    BC074055
    UniProtKB/TrEMBL
    A0A8M1PAK8, Q6GMJ2
    Related
    ENSDARP00000124440.1, ENSDART00000081714.6

  2. NM_200558.2 → NP_956852.2  myosin binding protein Ha isoform 1

    Status: VALIDATED

    Source sequence(s)
    BC067675, BC074055
    UniProtKB/TrEMBL
    A0A8M1PEL2, Q6NW94
    Related
    ENSDARP00000125046.1, ENSDART00000139834.2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    6077503..6126003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353529.2 → XP_017209018.1  uncharacterized protein LOC393530 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z3P8

  2. XM_017353530.2 → XP_017209019.1  uncharacterized protein LOC393530 isoform X2

    UniProtKB/TrEMBL
    A0A8M6YVU2
Nucleotide Protein
Heading Accession and Version

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