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imp3 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) [ Danio rerio (zebrafish) ]

Gene ID: 393237, updated on 4-Jul-2014
Official Symbol
imp3provided by ZNC
Official Full Name
IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1062
Locus tag
CH211-112D19.2
See related
Ensembl:ENSDARG00000069287
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:56526
Annotation information
Annotation category: partial on reference assembly
See imp3 in MapViewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 2 NC_007113.5 (9772882..9778816, complement)

Chromosome 2 - NC_007113.5Genomic Context describing neighboring genes Neighboring gene zgc:55943 Neighboring gene SEC22 vesicle trafficking protein homolog B (S. cerevisiae), a Neighboring gene zgc:110602 Neighboring gene protein FAM78B-like

Genomic Sequence:
NC_007113.5 chromosome 2 reference Zv9 Primary Assembly
  • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...

Markers

Homology

Clone Names

  • MGC56526

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
U3 small nucleolar ribonucleoprotein protein IMP3
Names
U3 small nucleolar ribonucleoprotein protein IMP3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291357.1NP_001278286.1  U3 small nucleolar ribonucleoprotein protein IMP3

    Status: VALIDATED

    Source sequence(s)
    EH466588, EH493453, EH598772
    UniProtKB/TrEMBL
    A5WV64
    Conserved Domains (2) summary
    COG0522
    Location:1177
    Blast Score: 247
    RpsD; Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
    cd00165
    Location:108169
    Blast Score: 92
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007113.5 

    Range
    9772882..9778816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_200267.1: Suppressed sequence

    Description
    NM_200267.1: This RefSeq was permanently suppressed because it was based on a chimeric sequence.