RpS17 Ribosomal protein S17 [Drosophila melanogaster] - Gene

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Summary

Official Symbol: RpS17provided by Flybase
Official Full Name: Ribosomal protein S17provided by Flybase
Primary source: FLYBASE:FBgn0005533
Locus tag: Dmel_CG3922
Gene type: protein coding
RNA name: ribosomal protein S17
RefSeq status: REVIEWED
Organism: Drosophila melanogaster
Lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as: anon-EST:Posey48; BcDNA:RE44119; CG3922; D9; Dmel\CG3922; l(3)67BDo; l(3)dtOA4; M; M(3)67; M(3)67C; M(3)i; M(3)i(55); M(3)i[55]; M(3)q; M(3)RpS17; M(3)S33; M(3L)i; M(3L)i[55]; Minute; rpS17; Rps17; RPS17

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Genomic context

Location :: 67B5-67B5; 3-28.9 cM

Sequence :: Chromosome: 3L; NT_037436.3 (9421789..9422917, complement)

See RpS17 in Epigenomics, MapViewer

Chromosome 3L - NT_037436.3 Genomic Context describing neighboring genes

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Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

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Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

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Interactions

Products	Interactant	Other Gene	Source	Pubs	Description
BioGRID:64481	BioGRID:66158	CG11672	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:59096	CG12985	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:59958	CG14011	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:58851	CG15646	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:59415	CG17599	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:68488	CG2246	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:64456	CG4476	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:60829	CG8997	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:62105	Vha36-2	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:1073145	calypso	BioGRID	PubMed	Affinity Capture-MS
BioGRID:64481	BioGRID:61072	elfless	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:65326	ftz-f1	BioGRID	PubMed	Two-hybrid
BioGRID:64481	BioGRID:59347	run	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:64481	BioGRID:57646	ssx	BioGRID	PubMed	Two-hybrid

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General gene information

Pathways from BioSystems

Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem (from WikiPathways)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem
Cytoplasmic Ribosomal Proteins
Eukaryotic Translation Elongation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Termination, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Termination, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Peptide chain elongation, organism-specific biosystem (from REACTOME)
Peptide chain elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosomal scanning and start codon recognition, organism-specific biosystem (from REACTOME)
Ribosomal scanning and start codon recognition, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Gene Ontology Provided by FlyBase

Function	Evidence Code	Pubs
structural constituent of ribosome	ISS Inferred from Sequence or Structural Similarity more info
structural constituent of ribosome	NAS Non-traceable Author Statement more info

Process	Evidence Code	Pubs
translation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
cytosolic small ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info
lipid particle	IDA Inferred from Direct Assay more info	PubMed
ribosome	IDA Inferred from Direct Assay more info	PubMed
ribosome	NAS Non-traceable Author Statement more info

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General protein information

Preferred Names: CG3922 gene product from transcript CG3922-RB

Names: CG3922-PB; Minute(3)67C; RpS17-PB; ribosomal protein S17

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NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NT_037436.3

Range

9421789..9422917, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_079278.2 → NP_524002.1 ribosomal protein S17 [Drosophila melanogaster]

Status: REVIEWED

UniProtKB/Swiss-Prot

P17704

Related

FBpp0076207, FBtr0076479

Conserved Domains (1) summary

cl00610
Location:18 – 122
Blast Score: 441

Ribosomal_S17e; Ribosomal S17

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Related Sequences

Nucleotide		Protein
Heading	Accession and Version	Protein
genomic	AJ271817.1	CAB72251.1
genomic	M22142.1	AAA28869.1
genomic	HC932315.1	CBU86703.1
mRNA	BT001651.1	AAN71406.1
genomic	AE014296.4	AAF50272.1
genomic	HB874906.1	CBF61827.1
genomic	HB872553.1	CBF60331.1
genomic	HC929962.1	CBU85575.1