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    CG5280 [ Drosophila melanogaster ]

    Gene ID: 39033, updated on 4-Feb-2012
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    Summary

    Official Symbol
    CG5280provided by Flybase
    Primary source
    FLYBASE:FBgn0035952
    Locus tag
    Dmel_CG5280
    Gene type
    protein coding
    RNA name
    CG5280
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5280
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    Genomic context

    Location :
    66F1-66F1
    Sequence :
    Chromosome: 3L; NT_037436.3 (8982168..8983328, complement)
    See CG5280 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG13314 gene product from transcript CG13314-RB Neighboring gene CG5288 gene product from transcript CG5288-RA Neighboring gene CG5068 gene product from transcript CG5068-RA Neighboring gene smaug Neighboring gene CG5087 gene product from transcript CG5087-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64437 BioGRID:61244 CG10466    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:58499 CG11727    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:57762 CG12496    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:65162 CG13032    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:58851 CG15646    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:60459 CG18619    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:57946 CG5062    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:66178 CG7352    BioGRID  PubMed Two-hybrid 
    BioGRID:64437 BioGRID:66319 CG8301    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
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    General protein information

    Preferred Names
    CG5280 gene product from transcript CG5280-RA
    Names
    CG5280
    CG5280-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      8982168..8983328, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140021.1 → NP_648278.1  CG5280 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VSS7
      Related
      FBpp0076279, FBtr0076552
      Conserved Domains (1) summary
      pfam05250
      Location:35 – 249
      Blast Score: 621
      UPF0193; Uncharacterized protein family (UPF0193)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF50335.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VSS7.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content