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    CG6745 [ Drosophila melanogaster ]

    Gene ID: 38969, updated on 5-Feb-2012
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    Summary

    Official Symbol
    CG6745provided by Flybase
    Primary source
    FLYBASE:FBgn0035901
    Locus tag
    Dmel_CG6745
    Gene type
    protein coding
    RNA name
    CG6745
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT20937; Dmel\CG6745
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    Genomic context

    Location :
    66D5-66D5
    Sequence :
    Chromosome: 3L; NT_037436.3 (8503138..8506104)
    See CG6745 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG6902 gene product from transcript CG6902-RA Neighboring gene CG6694 gene product from transcript CG6694-RA Neighboring gene CG6765 gene product from transcript CG6765-RA Neighboring gene CG6683 gene product from transcript CG6683-RA Neighboring gene CG6776 gene product from transcript CG6776-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila. Bushati N, et al. Curr Biol, 2008 Apr 8. PMID 18394895.
    2. Identification of novel genes that modify phenotypes induced by Alzheimer's beta-amyloid overexpression in Drosophila. Cao W, et al. Genetics, 2008 Mar. PMID 18245849.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (13) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64379 BioGRID:58604 CG11138    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:58382 CG12645    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:66742 CG14369    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:61850 CG1675    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:59567 CG5440    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:63149 CG6758    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:65121 Cpr72Ea    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:58290 HP1b    BioGRID  PubMed Two-hybrid 
    BioGRID:64379 BioGRID:60833 cenG1A    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG6745 gene: The CG6745 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, mosquito, S.pombe, S.cerevisiae, K.lactis, E.gossypii, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG6745 gene product from transcript CG6745-RA
    Names
    CG6745
    CG6745-PA
    NP_648231.1
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      8503138..8506104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139974.3 → NP_648231.1  CG6745 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VSK9
      Related
      FBpp0076346, FBtr0076620
      Conserved Domains (2) summary
      cd02576
      Location:236 – 674
      Blast Score: 908
      PseudoU_synth_ScPUS7; PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to ...
      cl00130
      Location:65 – 93
      Blast Score: 129
      PseudoU_synth; PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF50409.1
    mRNA AY069192.1 AAL39337.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VSK9.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content