Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    CG8560 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38830, updated on 5-May-2013
    Official Symbol
    CG8560provided by FlyBase
    Primary source
    FLYBASE:FBgn0035781
    Locus tag
    Dmel_CG8560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT14378; Dmel\CG8560
    Location :
    65F11-65F11
    Sequence :
    Chromosome: 3L; NT_037436.3 (7395432..7397281, complement)
    See CG8560 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG8562 gene product from transcript CG8562-RA Neighboring gene CG18417 gene product from transcript CG18417-RA Neighboring gene putative noncoding RNA 015:3L Neighboring gene CG42458 gene product from transcript CG42458-RA Neighboring gene CG8556 gene product from transcript CG8556-RB

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Use of mutagenesis, genetic mapping and next generation transcriptomics to investigate insecticide resistance mechanisms. Kalajdzic P, et al. PLoS One, 2012. PMID 22768270.
    2. Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster. Lundberg LE, et al. Nucleic Acids Res, 2012 Jul. PMID 22434883.
    3. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573.
    4. New comparative genomics approach reveals a conserved health span signature across species. Antosh M, et al. Aging (Albany NY), 2011 Jun. PMID 21775776.
    5. Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression. Doggett K, et al. Dev Biol, 2011 Jul 15. PMID 21570388.

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64268 BioGRID:61276 CG10949    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:60942 CG3793    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:64380 CG6683    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:67574 PSR    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:68318 Pglym78    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:58696 Tango2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:64268 BioGRID:60169 santa-maria    BioGRID  PubMed Affinity Capture-MS 

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    NOT carboxypeptidase activity NAS
    Non-traceable Author Statement
    more info
    		  
    metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Preferred Names
    CG8560 gene product from transcript CG8560-RA
    Names
    CG8560
    CG8560-PA
    CG8560-PB
    NP_001261516.1
    NP_648120.3

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      7395432..7397281, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139863.4 → NP_648120.3  CG8560, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q961J8
      Related
      FBpp0076578, FBtr0076868
      Conserved Domains (2) summary
      pfam02244
      Location:27 – 100
      Blast Score: 177
      Propep_M14; Carboxypeptidase activation peptide
      cd03860
      Location:123 – 414
      Blast Score: 1223
      M14_CP_A-B_like; Peptidase M14 carboxypeptidase subfamily A/B-like

    2. NM_001274587.1 → NP_001261516.1  CG8560, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q961J8
      Related
      FBpp0304971, FBtr0332725
      Conserved Domains (2) summary
      pfam02244
      Location:27 – 100
      Blast Score: 177
      Propep_M14; Carboxypeptidase activation peptide
      cd03860
      Location:123 – 414
      Blast Score: 1223
      M14_CP_A-B_like; Peptidase M14 carboxypeptidase subfamily A/B-like
    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AGB94211.1
    genomic AE014296.4 AAF50560.2
    mRNA AY051552.1 AAK92976.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q961J8.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • BioAssay
        Related PubChem BioAssays
      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed (GeneRIF)
        GeneRIF -- Gene Reference Into Function Staff of the Index Section in the National Library of Medicine review the current literature. When they find articles focused on the structure and function of a gene, they write a brief summary of the impact of the paper and make the connection between the citation (PubMed) and Gene. An interface exists for interested users to submit such data as well. http://www.ncbi.nlm.nih.gov/projects/GeneRIF/GeneRIFhelp.html
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...