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CG13295 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38692, updated on 4-Apr-2024

Summary

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Official Symbol
CG13295provided by FlyBase
Primary source
FLYBASE:FBgn0035674
Locus tag
Dmel_CG13295
See related
AllianceGenome:FB:FBgn0035674
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13285; Dmel\CG13295
Summary
Predicted to be active in mitochondrion. Is expressed in several structures, including dorsal pharyngeal muscle cell; embryonic/larval midgut; hindgut proper primordium; and presumptive embryonic/larval digestive system. Orthologous to human TCAIM (T cell activation inhibitor, mitochondrial). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
65A5-65A5; 3-16 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (6073490..6075245, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (6066590..6068345, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene short spindle 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitf is a master regulator of the v-ATPase, forming a control module for cellular homeostasis with v-ATPase and TORC1. Zhang T, et al. J Cell Sci, 2015 Aug 1. PMID 26092939, Free PMC Article
  2. A cell atlas of the adult Drosophila midgut. Hung RJ, et al. Proc Natl Acad Sci U S A, 2020 Jan 21. PMID 31915294, Free PMC Article
  3. The carnegie protein trap library: a versatile tool for Drosophila developmental studies. Buszczak M, et al. Genetics, 2007 Mar. PMID 17194782, Free PMC Article
  4. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article
  5. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG13295-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    6073490..6075245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139764.3 → NP_648021.1  uncharacterized protein Dmel_CG13295 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648021.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT6
    Related
    FBpp0076773
    Conserved Domains (2) summary
    pfam14687
    Location:23 → 122
    DUF4460; Domain of unknown function (DUF4460)
    pfam14688
    Location:179 → 482
    DUF4461; Domain of unknown function (DUF4461)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VRT6 Q9VRT6

Gene LinkOut

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