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    CG11347 [ Drosophila melanogaster ]

    Gene ID: 38543, updated on 8-Jan-2012
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    Summary

    Official Symbol
    CG11347provided by Flybase
    Primary source
    FLYBASE:FBgn0035542
    Locus tag
    Dmel_CG11347
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11347; DOR
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    Genomic context

    Location :
    64B4-64B5
    Sequence :
    Chromosome: 3L; NT_037436.3 (4406948..4420266)
    See CG11347 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene slowdown Neighboring gene Syntaxin 17 Neighboring gene CG15019 gene product from transcript CG15019-RB Neighboring gene CG15020 gene product from transcript CG15020-RA Neighboring gene nicotinic Acetylcholine Receptor beta 64B

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. The nuclear cofactor DOR regulates autophagy in mammalian and Drosophila cells. Mauvezin C, et al. EMBO Rep, 2010 Jan. PMID 20010805.
    2. MidExDB: a database of Drosophila CNS midline cell gene expression. Wheeler SR, et al. BMC Dev Biol, 2009 Nov 10. PMID 19903351.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. data indicate that DOR(CG11347)regulates autophagosome formation and protein degradation in mammalian and Drosophila cells
      Title: The nuclear cofactor DOR regulates autophagy in mammalian and Drosophila cells.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:64018 BioGRID:58422 Atg8a    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:67164 Atg8b    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:58700 CG11164    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:68308 CG11876    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:67246 CG31224    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:60729 CG5792    BioGRID  PubMed Two-hybrid 
    BioGRID:64018 BioGRID:58075 RpL7A    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    ligand-dependent nuclear receptor transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    		  
    steroid hormone receptor binding IPI
    Inferred from Physical Interaction
    more info
    		  
    Process Evidence Code Pubs
    ecdysone receptor-mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		  
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    		  
    regulation of autophagy IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    nucleus IC
    Inferred by Curator
    more info
    		  
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    General protein information

    Preferred Names
    CG11347 gene product from transcript CG11347-RE
    Names
    CG11347
    CG11347-PA
    CG11347-PB
    CG11347-PC
    CG11347-PD
    CG11347-PE
    CG11347-PF
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      4406948..4420266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001104033.1 → NP_001097503.1  CG11347, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZC7
      Related
      FBpp0112053, FBtr0113140

    2. NM_168084.1 → NP_728991.1  CG11347, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZC7
      Related
      FBpp0073150, FBtr0073294

    3. NM_168083.2 → NP_728990.1  CG11347, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZC7
      Related
      FBpp0073151, FBtr0073295

    4. NM_139643.2 → NP_647900.1  CG11347, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZC7
      Related
      FBpp0073152, FBtr0073296

    5. NM_168085.2 → NP_728992.1  CG11347, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRB4
      Related
      FBpp0073153, FBtr0073297

    6. NM_001104034.1 → NP_001097504.1  CG11347, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JNK7
      Related
      FBpp0112054, FBtr0113141
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY118829.1 AAM50689.1
    genomic AE014296.4 AAF47897.2
    genomic AE014296.4 AAN11601.1
    genomic AE014296.4 AAF47898.1
    genomic AE014296.4 ABW08462.1
    genomic AE014296.4 AAN11602.1
    genomic AE014296.4 ABW08463.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VZC7.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content