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Vmn2r16 vomeronasal 2, receptor 16 [ Mus musculus (house mouse) ]

Gene ID: 384220, updated on 11-Apr-2024

Summary

Official Symbol
Vmn2r16provided by MGI
Official Full Name
vomeronasal 2, receptor 16provided by MGI
Primary source
MGI:MGI:3647194
See related
Ensembl:ENSMUSG00000092080 AllianceGenome:MGI:3647194
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG384220
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
5 F; 5 53.24 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109478247..109512347)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109330381..109364481)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RAD21 homolog pseudogene Neighboring gene vomeronasal 2, receptor 15 Neighboring gene vomeronasal 2, receptor 84 pseudogene Neighboring gene vomeronasal 2, receptor 17

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
vomeronasal 2, receptor 16
Names
vomeronasal receptor Vmn2r16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001385189.1NP_001372118.1  vomeronasal 2, receptor 16 precursor

    Status: VALIDATED

    Source sequence(s)
    AC110917
    Consensus CDS
    CCDS51602.1
    UniProtKB/TrEMBL
    A0A3B2WCY4, A0A8V5L197
    Related
    ENSMUSP00000159506.1, ENSMUST00000240713.1
    Conserved Domains (3) summary
    cd15283
    Location:582833
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:45501
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam07562
    Location:509562
    NCD3G; Nine Cysteines Domain of family 3 GPCR

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    109478247..109512347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254643.1XP_030110503.1  vomeronasal 2, receptor 16 isoform X1

    UniProtKB/TrEMBL
    A0A3B2WCY4
    Conserved Domains (3) summary
    cd15283
    Location:587838
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:514567
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd06365
    Location:45501
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  2. XM_030254646.1XP_030110506.1  vomeronasal 2, receptor 16 isoform X3

    UniProtKB/TrEMBL
    A0A3B2WCY4
    Conserved Domains (2) summary
    cd15283
    Location:542793
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:45501
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  3. XM_036165258.1XP_036021151.1  vomeronasal 2, receptor 16 isoform X2

    UniProtKB/TrEMBL
    A0A3B2WCY4, E9Q025
    Related
    ENSMUSP00000127838.2, ENSMUST00000165180.3
    Conserved Domains (3) summary
    cd15283
    Location:583834
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:45501
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam07562
    Location:509563
    NCD3G; Nine Cysteines Domain of family 3 GPCR

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001104627.1: Suppressed sequence

    Description
    NM_001104627.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.