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    CG12079 [ Drosophila melanogaster ]

    Gene ID: 38378, updated on 9-May-2012
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    Summary

    Official Symbol
    CG12079provided by Flybase
    Primary source
    FLYBASE:FBgn0035404
    Locus tag
    Dmel_CG12079
    Gene type
    protein coding
    RNA name
    CG12079
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG12079
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    Genomic context

    Location :
    63B7-63B7
    Sequence :
    Chromosome: 3L; NT_037436.3 (3158485..3159573, complement)
    See CG12079 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG12082 gene product from transcript CG12082-RB Neighboring gene BTB-protein-VII Neighboring gene piefke Neighboring gene CG11495 gene product from transcript CG11495-RA Neighboring gene CG14962 gene product from transcript CG14962-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates. Porcelli D, et al. BMC Evol Biol, 2007 Nov 8. PMID 18315839.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. Tripoli G, et al. Genome Biol, 2005. PMID 15693940.

    See all (15) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63876 BioGRID:71006 Acp95EF    BioGRID  PubMed Two-hybrid 
    BioGRID:63876 BioGRID:60093 CG11327    BioGRID  PubMed Two-hybrid 
    BioGRID:63876 BioGRID:66008 CG15177    BioGRID  PubMed Two-hybrid 
    BioGRID:63876 BioGRID:64591 CG6463    BioGRID  PubMed Two-hybrid 
    BioGRID:63876 BioGRID:58254 Trf4-1    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG12079 gene: The CG12079 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, , N.crassa, A.thaliana, and rice.

    Pathways from BioSystems

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    NADH dehydrogenase (ubiquinone) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    NADH dehydrogenase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    mitochondrial respiratory chain complex I ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG12079 gene product from transcript CG12079-RA
    Names
    CG12079
    CG12079-PA
    NADH ubiquinone oxidoreductase 30 kDa
    NADH:ubiquinone oxidoreductase 30 kDa subunit
    NP_647775.1
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      3158485..3159573, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139518.2 → NP_647775.1  CG12079 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZU4
      Related
      FBpp0072975
      Conserved Domains (2) summary
      PRK06074
      Location:60 – 242
      Blast Score: 582
      PRK06074; NADH dehydrogenase subunit C; Provisional
      cl16917
      Location:86 – 208
      Blast Score: 424
      Complex1_30kDa; Respiratory-chain NADH dehydrogenase, 30 Kd subunit
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY118532.1 AAM49901.1
    genomic AE014296.4 AAF47723.1
    mRNA BT011342.1 AAR96134.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VZU4.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content