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    CG13937 [ Drosophila melanogaster ]

    Gene ID: 38249, updated on 9-May-2012
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    Summary

    Official Symbol
    CG13937provided by Flybase
    Primary source
    FLYBASE:FBgn0035287
    Locus tag
    Dmel_CG13937
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13937
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    Genomic context

    Location :
    62B7-62B9
    Sequence :
    Chromosome: 3L; NT_037436.3 (1876551..1883037, complement)
    See CG13937 in Epigenomics, MapViewer

    Chromosome 3L - NT_037436.3Genomic Context describing neighboring genes Neighboring gene CG13924 gene product from transcript CG13924-RC Neighboring gene CG1828 gene product from transcript CG1828-RB Neighboring gene Adenine phosphoribosyltransferase Neighboring gene Tetraspan membrane protein in hair cell stereocilia ortholog

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor. Shimojima T, et al. Genes Dev, 2003 Jul 1. PMID 12815073.

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63777 BioGRID:68014 RpL27    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    HNK-1 sulfotransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    carbohydrate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG13937 gene product from transcript CG13937-RD
    Names
    CG13937
    CG13937-PD
    CG13937-PE
    CG13937-PF
    CG13937-PG
    NP_001163325.1
    NP_647673.2
    NP_728688.2
    NP_728689.2
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.3

      Range
      1876551..1883037, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139416.2 → NP_647673.2  CG13937, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W070
      Related
      FBpp0289938, FBtr0300714
      Conserved Domains (1) summary
      pfam03567
      Location:113 – 341
      Blast Score: 440
      Sulfotransfer_2; Sulfotransferase family

    2. NM_167924.2 → NP_728689.2  CG13937, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRG5
      Related
      FBpp0289940, FBtr0300716
      Conserved Domains (1) summary
      pfam03567
      Location:181 – 409
      Blast Score: 441
      Sulfotransfer_2; Sulfotransferase family

    3. NM_001169854.1 → NP_001163325.1  CG13937, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W070
      Related
      FBpp0289939, FBtr0300715
      Conserved Domains (1) summary
      pfam03567
      Location:113 – 341
      Blast Score: 440
      Sulfotransfer_2; Sulfotransferase family

    4. NM_167923.2 → NP_728688.2  CG13937, isoform G [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRG5
      Related
      FBpp0289941, FBtr0300717
      Conserved Domains (1) summary
      pfam03567
      Location:181 – 409
      Blast Score: 441
      Sulfotransfer_2; Sulfotransferase family
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014296.4 AAF47588.3
    genomic AE014296.4 ACZ94597.1
    mRNA BT009953.1 AAQ22422.1
    genomic AE014296.4 AAN11503.2
    genomic AE014296.4 AAN11504.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YU73.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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