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zbtb34.L zinc finger and BTB domain containing 34 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379252, updated on 11-Apr-2024

Summary

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Official Symbol
zbtb34.L
Official Full Name
zinc finger and BTB domain containing 34 L homeolog
Primary source
Xenbase:XB-GENE-996175
Locus tag
XELAEV_18038272mg
See related
EnsemblRapid:ENSXLAG00005028358
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zbtb34
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Genomic context

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Location:
chromosome: 8L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (2922854..2960064)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (2786483..2817936)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, N type, alpha 1B subunit S homeolog Neighboring gene uncharacterized LOC121396855 Neighboring gene collagen alpha-1(I) chain Neighboring gene zinc finger and BTB domain containing 43 L homeolog Neighboring gene Ral GEF with PH domain and SH3 binding motif 1 L homeolog Neighboring gene uncharacterized LOC108698169 Neighboring gene angiopoietin like 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53639

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain containing 34 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086096.1 → NP_001079565.1  zinc finger and BTB domain containing 34 L homeolog

    See identical proteins and their annotated locations for NP_001079565.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044333
    UniProtKB/TrEMBL
    A0A974C6U8, Q7ZXP3
    Related
    ENSXLAP00005084347.1, ENSXLAT00005085998.1
    Conserved Domains (5) summary
    smart00225
    Location:33 → 124
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:368 → 388
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:422 → 443
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:22 → 122
    BTB; BTB/POZ domain
    pfam13465
    Location:380 → 405
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2922854..2960064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228594.2 → XP_018084083.1  zinc finger and BTB domain containing 34 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0THK2

  2. XM_018228595.2 → XP_018084084.1  zinc finger and BTB domain containing 34 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974C6U8, Q7ZXP3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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