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    tamo [ Drosophila melanogaster ]

    Gene ID: 37864, updated on 10-May-2012
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    Summary

    Official Symbol
    tamoprovided by Flybase
    Primary source
    FLYBASE:FBgn0041582
    Locus tag
    Dmel_CG4057
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    60B; CG4057; Dmel\CG4057
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    Genomic context

    Location :
    60B11-60B11
    Sequence :
    Chromosome: 2R; NT_033778.3 (20014161..20021074, complement)
    See tamo in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG3253 gene product from transcript CG3253-RB Neighboring gene CG3257 gene product from transcript CG3257-RB Neighboring gene CG13569 gene product from transcript CG13569-RB Neighboring gene Zinc finger protein RP-8 Neighboring gene CG4065 gene product from transcript CG4065-RB Neighboring gene Dopamine N acetyltransferase Neighboring gene DnaJ-like-60

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Gan Q, et al. Cell Res, 2010 Jul. PMID 20440302.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Dorsoventral axis formation in the Drosophila embryo--shaping and transducing a morphogen gradient. Moussian B, et al. Curr Biol, 2005 Nov 8. PMID 16271864.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Tamo modulates the levels of import of Dorsal and other proteins
      Title: Tamo selectively modulates nuclear import in Drosophila.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63443 BioGRID:58020 Act5C    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66029 Ama    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:58700 CG11164    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66107 CG11286    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:60854 CG15293    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:59851 CG15436    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:59336 CG1702    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:60051 CG42369    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66503 CG5270    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66367 CG8534    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:58903 CG8924    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:62787 GstE3    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:59745 Mad    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:62137 Nup54    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:59992 Vm26Ab    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:57975 Vsx2    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:58141 brk    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:61043 dl    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:63443 BioGRID:66125 dsx    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:58911 exd    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66419 hth    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:66656 mbo    BioGRID  PubMed Reconstituted Complex 
    BioGRID:63443 BioGRID:61115 msl-1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:63443 BioGRID:62356 phyl    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:68814 ran    BioGRID  PubMed Reconstituted Complex 
    BioGRID:63443 BioGRID:64987 ran-like    BioGRID  PubMed Reconstituted Complex 
    BioGRID:63443 BioGRID:65883 rev7    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:62194 sug    BioGRID  PubMed Two-hybrid 
    BioGRID:63443 BioGRID:71683 wek    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    Ran GTPase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    nuclear localization sequence binding NAS
    Non-traceable Author Statement
    more info
    		  
    protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    multicellular organismal development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    negative regulation of protein import into nucleus NAS
    Non-traceable Author Statement
    more info
    		  
    protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG4057 gene product from transcript CG4057-RA
    Names
    CG4057-PA
    CG4057-PB
    tamo
    tamo-PA
    tamo-PB
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      20014161..20021074, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166664.1 → NP_726426.1  tamo, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZS3
      UniProtKB/Swiss-Prot
      Q9W1A4
      Related
      FBpp0072188, FBtr0072281
      Conserved Domains (2) summary
      cd09212
      Location:75 – 158
      Blast Score: 117
      PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
      cl02656
      Location:740 – 764
      Blast Score: 93
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_138045.2 → NP_611889.1  tamo, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZS3
      UniProtKB/Swiss-Prot
      Q9W1A4
      Related
      FBpp0072189, FBtr0072282
      Conserved Domains (2) summary
      cd09212
      Location:75 – 158
      Blast Score: 117
      PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
      cl02656
      Location:740 – 764
      Blast Score: 93
      zf-RanBP; Zn-finger in Ran binding protein and others
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE013599.4 AAF47169.1
    genomic AE013599.4 AAM68306.1
    mRNA BT001486.1 AAN71241.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1A4.1 GenPept
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    Additional Links

    Gene LinkOut

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