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    insB IS1 ORF2 [ Shigella boydii Sb227 ]

    Gene ID: 3783080, updated on 11-May-2013
    Gene symbol
    insB
    Gene description
    IS1 ORF2
    Locus tag
    SBO_4097
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Shigella boydii Sb227 (strain: Sb227, serotype: 4)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella
    Sequence :
    NC_007613.1 (4139016..4139519)

    NC_007613.1Genomic Context describing neighboring genes Neighboring gene IS1 ORF2 Neighboring gene hypothetical protein Neighboring gene acetate permease Neighboring gene hypothetical protein Neighboring gene pseudo

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Yang F, et al. Nucleic Acids Res, 2005. PMID 16275786.
    2. Molecular cloning and characterization of genes for Shigella sonnei form I O polysaccharide: proposed biosynthetic pathway and stable expression in a live salmonella vaccine vector. Xu DQ, et al. Infect Immun, 2002 Aug. PMID 12117952.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • SBO4097
    Names
    IS1 ORF2
    YP_410358.1
    • Code: L; COG: COG1662

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007613.1

      Range
      4139016..4139519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_410358.1 IS1 ORF2 [Shigella boydii Sb227]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q31TS8
      Conserved Domains (1) summary
      cl00721
      Location:37 – 167
      Blast Score: 507
      DDE_Tnp_IS1; IS1 transposase
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000036.1 ABB68530.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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