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    CG15800 [ Drosophila melanogaster ]

    Gene ID: 37763, updated on 12-May-2012
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    Summary

    Official Symbol
    CG15800provided by Flybase
    Primary source
    FLYBASE:FBgn0034904
    Locus tag
    Dmel_CG15800
    Gene type
    protein coding
    RNA name
    CG15800
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG15800
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    Genomic context

    Location :
    60A1-60A1
    Sequence :
    Chromosome: 2R; NT_033778.3 (19678241..19678715, complement)
    See CG15800 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG11300 gene product from transcript CG11300-RA Neighboring gene CG5532 gene product from transcript CG5532-RA Neighboring gene CG9850 gene product from transcript CG9850-RA Neighboring gene CG30177 gene product from transcript CG30177-RA Neighboring gene CG13561 gene product from transcript CG13561-RA Neighboring gene CG5539 gene product from transcript CG5539-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970.
    5. Control of protein degradation by E3 ubiquitin ligases in Drosophila eye development. Ou CY, et al. Trends Genet, 2003 Jul. PMID 12850443.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63359 BioGRID:63867 CG11486    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:63648 CG13900    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:68004 CG4673    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:62713 CG5009    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:62020 CG9027    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:66526 Csk    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:61444 EcR    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:59479 MED15    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:64788 ara    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:68740 e(r)    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:62866 ena    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:61996 fbl6    BioGRID  PubMed Two-hybrid 
    BioGRID:63359 BioGRID:67644 vret    BioGRID  PubMed Two-hybrid 
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    General gene information

    Pathways from BioSystems

    • Circadian rhythm - mammal, organism-specific biosystem (from KEGG)
      Circadian rhythm - mammal, organism-specific biosystem
      Circadian rhythm - mammal
    • Circadian rhythm - mammal, conserved biosystem (from KEGG)
      Circadian rhythm - mammal, conserved biosystem
      Circadian rhythm - mammal
    • Protein processing in endoplasmic reticulum, organism-specific biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, organism-specific biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
    • Protein processing in endoplasmic reticulum, conserved biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, conserved biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
    • SCF-BTRC complex, organism-specific biosystem (from KEGG)
      SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
    • SCF-FBW7 complex, organism-specific biosystem (from KEGG)
      SCF-FBW7 complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
    • SCF-SKP2 complex, organism-specific biosystem (from KEGG)
      SCF-SKP2 complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
    • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
      TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • TGF-beta signaling pathway, conserved biosystem (from KEGG)
      TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
      Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
      Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Wnt signaling pathway, organism-specific biosystem (from KEGG)
      Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
    • Wnt signaling pathway, conserved biosystem (from KEGG)
      Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    ubiquitin-protein ligase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    nuclear ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG15800 gene product from transcript CG15800-RA
    Names
    CG15800
    CG15800-PA
    NP_611828.1
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      19678241..19678715, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137984.1 → NP_611828.1  CG15800 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1J7
      Related
      FBpp0072154, FBtr0072245
      Conserved Domains (1) summary
      cl02518
      Location:1 – 113
      Blast Score: 150
      BTB; BTB/POZ domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE013599.4 AAF47061.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1J7.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content