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    CG3800 [ Drosophila melanogaster ]

    Gene ID: 37646, updated on 9-May-2012
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    Summary

    Official Symbol
    CG3800provided by Flybase
    Primary source
    FLYBASE:FBgn0034802
    Locus tag
    Dmel_CG3800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe1B4; anon-EST:fe2B6; BEST:GM06241; CG11716; Dmel\CG3800
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    Genomic context

    Location :
    59B6-59B6
    Sequence :
    Chromosome: 2R; NT_033778.3 (18822092..18824453, complement)
    See CG3800 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene Nucleoporin 214 Neighboring gene CG42678 gene product from transcript CG42678-RG Neighboring gene CG3788 gene product from transcript CG3788-RB Neighboring gene CG9849 gene product from transcript CG9849-RA Neighboring gene CG3831 gene product from transcript CG3831-RA Neighboring gene CG42694 gene product from transcript CG42694-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Erect wing regulates synaptic growth in Drosophila by integration of multiple signaling pathways. Haussmann IU, et al. Genome Biol, 2008 Apr 17. PMID 18419806.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (12) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63255 BioGRID:57628 CG11380    BioGRID  PubMed Two-hybrid 
    BioGRID:63255 BioGRID:66539 CG14718    BioGRID  PubMed Two-hybrid 
    BioGRID:63255 BioGRID:63828 CG16985    BioGRID  PubMed Two-hybrid 
    BioGRID:63255 BioGRID:64358 Cpr66Cb    BioGRID  PubMed Two-hybrid 
    BioGRID:63255 BioGRID:63037 king-tubby    BioGRID  PubMed Two-hybrid 
    BioGRID:63255 BioGRID:59169 phm    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG3800 gene: The CG3800 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, S.cerevisiae, K.lactis, , , and N.crassa.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    nucleic acid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    nucleic acid binding NAS
    Non-traceable Author Statement
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
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    General protein information

    Preferred Names
    CG3800 gene product from transcript CG3800-RA
    Names
    CG3800
    CG3800-PA
    CG3800-PB
    anon-fast-evolving-1B4
    anon-fast-evolving-2B6
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      18822092..18824453, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137895.2 → NP_611739.1  CG3800, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8T8R1
      Related
      FBpp0071903
      Conserved Domains (1) summary
      PTZ00368
      Location:6 – 161
      Blast Score: 201
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    2. NM_001202063.1 → NP_001188992.1  CG3800, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8T8R1
      Conserved Domains (1) summary
      PTZ00368
      Location:6 – 161
      Blast Score: 201
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY118596.1 AAM49965.1
    genomic AE013599.4 ADV37238.1
    genomic AE013599.4 AAN16117.1
    mRNA AY075371.1 AAL68216.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T8R1.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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