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    KCNH2 potassium voltage-gated channel, subfamily H (eag-related), member 2 [ Homo sapiens (human) ]

    Gene ID: 3757, updated on 12-May-2013
    Official Symbol
    KCNH2provided by HGNC
    Official Full Name
    potassium voltage-gated channel, subfamily H (eag-related), member 2provided by HGNC
    Primary source
    HGNC:6251
    See related
    Ensembl:ENSG00000055118; HPRD:01069; MIM:152427; Vega:OTTHUMG00000158341
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ERG1; HERG; LQT2; SQT1; HERG1; Kv11.1
    Summary
    This gene encodes a voltage-activated potassium channel belonging to the eag family. It shares sequence similarity with the Drosophila ether-a-go-go (eag) gene. Mutations in this gene can cause long QT syndrome type 2 (LQT2). Transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Jul 2008]
    Location :
    7q36.1
    Sequence :
    Chromosome: 7; NC_000007.13 (150642044..150675402, complement)
    See KCNH2 in Epigenomics, MapViewer

    Chromosome 7 - NC_000007.13Genomic Context describing neighboring genes Neighboring gene transmembrane protein 176B Neighboring gene transmembrane protein 176A Neighboring gene amiloride binding protein 1 (amine oxidase (copper-containing)) Neighboring gene nitric oxide synthase 3 (endothelial cell) Neighboring gene autophagy related 9B Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 8

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Long QT syndrome 2

    Summary from GeneReviews: Romano-Ward Syndrome Go to GeneReviews

    Disease Characteristics
    Romano-Ward syndrome (RWS) is purely a cardiac electrophysiologic disorder, characterized by QT prolongation and T-wave abnormalities on the ECG and the ventricular tachycardia torsade de pointes (TdP). TdP is usually self-terminating, thus causing a syncopal event, the most common symptom in individuals with RWS. Syncope typically occurs during exercise and high emotions, less frequently at rest or during sleep, and usually without warning. In some instances, TdP degenerates to ventricular fibrillation and causes aborted cardiac arrest (if the individual is defibrillated) or sudden death. Approximately 50% of individuals with a disease-causing mutation in one of the genes associated with RWS have symptoms, usually one to a few syncopal spells. While cardiac events may occur from infancy through middle age, they are most common from the pre-teen years through the 20s.
    Diagnosis Testing
    Diagnosis of RWS is established by prolongation of the QTc interval in the absence of specific conditions known to lengthen it (for example, QT-prolonging drugs) and/or molecular genetic testing of the genes known to be associated with RWS, of which KCNQ1 (locus name LQT1), KCNH2 (locus name LQT2) and SCN5A (locus name LQT3) are the most common. Other, less frequently involved genes are KCNE1 (locus name LQT5), KCNE2 (locus name LQT6), CAV3 (locus name LQT9), SCN4B (locus name LQT10), AKAP9 (locus name LQT11), SNTA1 (locus name LQT12) and KCNJ5 (locus name LQT13). Approximately 25% of families meeting clinical diagnostic criteria for RWS do not have detectable mutations in one of the above genes.
    Genetic Counseling
    RWS is inherited in an autosomal dominant manner. Most individuals diagnosed with RWS have an affected parent. The proportion of cases caused by de novo mutations is small. Each child of an individual with RWS has a 50% risk of inheriting the disease-causing mutation. Penetrance of the disease may vary. Prenatal testing for pregnancies at increased risk in families in which the disease-causing mutation is known is available.
    References
    Protein Gene Interaction Pubs
    Tat, p14 tat HIV-1 Tat protein inhibits hERG K(+) currents through the inhibition of hERG protein expression PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q12809 Potassium channel regulator 1 ALG10    HPRD  PubMed  
    Q12809 Q5I7T1 ALG10B    HPRD  PubMed  
    Q12809 Q6P1J9 CDC73    HPRD  PubMed  
    Q12809 P15382 KCNE1    HPRD  PubMed  
    Q12809 Q9Y6J6 KCNE2    HPRD  PubMed  
    Q12809 O75380 NDUFS6    HPRD  PubMed  
    Q12809 P17612 PRKACA    HPRD  PubMed  
    Q12809 Q15669 RHOH    HPRD  PubMed  
    Q12809 P62258 YWHAE    HPRD  PubMed  
    Q12809 Q04917 YWHAH    HPRD  PubMed  
    BioGRID:109959 BioGRID:126840 ALG10B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:114908 BAG2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109959 BioGRID:107262 CALR    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:107271 CANX    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:109959 BioGRID:107307 CAV3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:122724 CDC73    BioGRID  PubMed Two-hybrid 
    BioGRID:109959 BioGRID:114032 CUL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109959 BioGRID:109534 DNAJA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109959 BioGRID:117270 FKBP8    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:109959 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:109959 BioGRID:109540 HSPA4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:109544 HSPA8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109959 BioGRID:109955 KCNE1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:110805 NDUFS6    BioGRID  PubMed Two-hybrid 
    BioGRID:109959 BioGRID:116915 NEDD4L    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:116162 STIP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109959 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109959 BioGRID:113363 YWHAE    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    • Neuronal System, organism-specific biosystem (from REACTOME)
      Neuronal System, organism-specific biosystemThe human brain contains at least 100 billion neurons, each with the ability to influence many other cells. Clearly, highly sophisticated and efficient mechanisms are needed to enable communication a...
    • Potassium Channels, organism-specific biosystem (from REACTOME)
      Potassium Channels, organism-specific biosystemPotassium channels are tetrameric ion channels that are widely distributed and are found in all cell types. Potassium channels control resting membrane potential in neurons, contribute to regulation ...
    • SIDS Susceptibility Pathways, organism-specific biosystem (from WikiPathways)
      SIDS Susceptibility Pathways, organism-specific biosystemIn this model, we provide an integrated view of Sudden Infant Death Syndrome (SIDS) at the level of implicated tissues, signaling networks and genetics. The purpose of this model is to serve as an ov...
    • Voltage gated Potassium channels, organism-specific biosystem (from REACTOME)
      Voltage gated Potassium channels, organism-specific biosystemVoltage-gated K+ channels (Kv) determine the excitability of heart, brain and skeletal muscle cells. Kv form octameric channel with alpha subunits that forms the pore of the channel and associated be...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    delayed rectifier potassium channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    inward rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    voltage-gated potassium channel activity IDA
    Inferred from Direct Assay
    more info
     
    Process Evidence Code Pubs
    blood circulation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    muscle contraction TAS
    Traceable Author Statement
    more info
    PubMed 
    potassium ion transmembrane transport IDA
    Inferred from Direct Assay
    more info
     
    potassium ion transport TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of heart contraction TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of heart rate by cardiac conduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of ventricular cardiac muscle cell membrane repolarization IEA
    Inferred from Electronic Annotation
    more info
     
    synaptic transmission TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    voltage-gated potassium channel complex TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    potassium voltage-gated channel subfamily H member 2
    Names
    potassium voltage-gated channel subfamily H member 2
    ERG-1
    H-ERG
    hERG-1
    eag homolog
    eag-related protein 1
    ether-a-go-go-related protein 1
    ether-a-go-go-related gene potassium channel 1
    voltage-gated potassium channel subunit Kv11.1
    ether-a-go-go-related potassium channel protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008916.1 RefSeqGene

      Range
      4613..37971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_288

    mRNA and Protein(s)

    1. NM_000238.3NP_000229.1  potassium voltage-gated channel subfamily H member 2 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AF363636, BM674996, DQ525913, U04270
      Consensus CDS
      CCDS5910.1
      UniProtKB/Swiss-Prot
      Q12809
      UniProtKB/TrEMBL
      Q15BH2
      Related
      ENSP00000262186, OTTHUMP00000212821, ENST00000262186, OTTHUMT00000350741
      Conserved Domains (6) summary
      cd00038
      Location:742853
      Blast Score: 212
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd00130
      Location:41132
      Blast Score: 112
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      COG0664
      Location:736856
      Blast Score: 139
      Crp; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
      pfam00520
      Location:454659
      Blast Score: 186
      Ion_trans; Ion transport protein
      pfam07885
      Location:611660
      Blast Score: 136
      Ion_trans_2; Ion channel
      pfam13426
      Location:29130
      Blast Score: 187
      PAS_9; PAS domain
    2. NM_001204798.1NP_001191727.1  potassium voltage-gated channel subfamily H member 2 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' and 3' UTRs and 5' and 3' coding regions compared to variant 1, resulting in a shorter isoform (d) with different N- and C-termini compared to isoform a.
      Source sequence(s)
      AJ609614, BC001914, BG683210, BQ478289
      UniProtKB/Swiss-Prot
      Q12809
      UniProtKB/TrEMBL
      Q708S9
      Conserved Domains (3) summary
      cd00038
      Location:402462
      Blast Score: 121
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      pfam00520
      Location:114319
      Blast Score: 155
      Ion_trans; Ion transport protein
      pfam07885
      Location:271320
      Blast Score: 124
      Ion_trans_2; Ion channel
    3. NM_172056.2NP_742053.1  potassium voltage-gated channel subfamily H member 2 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2), also known as HERG-USO, differs in the 3' UTR and 3' coding region compared to variant 1, resulting in a shorter isoform (b) with a different C-terminus compared to isoform a.
      Source sequence(s)
      AB044806, BC001914, BQ478289, DQ525913
      Consensus CDS
      CCDS47747.1
      UniProtKB/TrEMBL
      G5E9I0
      UniProtKB/Swiss-Prot
      Q12809
      UniProtKB/TrEMBL
      Q15BH2
      Related
      ENSP00000387657, ENST00000430723
      Conserved Domains (5) summary
      cd00038
      Location:742802
      Blast Score: 122
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd00130
      Location:41132
      Blast Score: 112
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00520
      Location:454659
      Blast Score: 176
      Ion_trans; Ion transport protein
      pfam07885
      Location:611660
      Blast Score: 132
      Ion_trans_2; Ion channel
      pfam13426
      Location:29130
      Blast Score: 187
      PAS_9; PAS domain
    4. NM_172057.2NP_742054.1  potassium voltage-gated channel subfamily H member 2 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3), also known as HERG1b, differs in the 5' UTR and 5' coding region compared to variant 1, resulting in a shorter isoform (c) with a different N-terminus compared to isoform a.
      Source sequence(s)
      AJ512214, BG683210, BM674996, U04270
      Consensus CDS
      CCDS5911.1
      UniProtKB/Swiss-Prot
      Q12809
      Related
      ENSP00000328531, OTTHUMP00000212824, ENST00000330883, OTTHUMT00000350744
      Conserved Domains (4) summary
      cd00038
      Location:402513
      Blast Score: 210
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      COG0664
      Location:396516
      Blast Score: 137
      Crp; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
      pfam00520
      Location:114319
      Blast Score: 175
      Ion_trans; Ion transport protein
      pfam07885
      Location:271320
      Blast Score: 133
      Ion_trans_2; Ion channel

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000007.13 Reference GRCh37.p10 Primary Assembly

      Range
      150642044..150675402, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000139.1 Alternate HuRef

      Range
      144454320..144487268, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CRA_TCAGchr7v2

    Genomic

    1. AC_000068.1 Alternate CRA_TCAGchr7v2

      Range
      149971333..150004698, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018918.1 Alternate CHM1_1.0

      Range
      154094404..154127619, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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