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    KCNE1 potassium voltage-gated channel, Isk-related family, member 1 [ Homo sapiens ]

    Gene ID: 3753, updated on 14-May-2012

    Summary

    Official Symbol
    KCNE1provided by HGNC
    Official Full Name
    potassium voltage-gated channel, Isk-related family, member 1provided by HGNC
    Primary source
    HGNC:6240
    See related
    Ensembl:ENSG00000180509; HPRD:01442; MIM:176261; Vega:OTTHUMG00000086236
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ISK; JLNS; LQT5; MinK; JLNS2; LQT2/5; FLJ18426; FLJ38123; FLJ94103; MGC33114
    Summary
    The product of this gene belongs to the potassium channel KCNE family. Potassium ion channels are essential to many cellular functions and show a high degree of diversity, varying in their electrophysiologic and pharmacologic properties. This gene encodes a transmembrane protein known to associate with the product of the KVLQT1 gene to form the delayed rectifier potassium channel. Mutation in this gene are associated with both Jervell and Lange-Nielsen and Romano-Ward forms of long-QT syndrome. Alternatively spliced transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    21q22.12
    Sequence :
    Chromosome: 21; NC_000021.8 (35818988..35883613, complement)
    See KCNE1 in Epigenomics, MapViewer

    Chromosome 21 - NC_000021.8Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 165, member B Neighboring gene uncharacterized LOC388820 Neighboring gene regulator of calcineurin 1 Neighboring gene uncharacterized LOC100506369 Neighboring gene chloride intracellular channel 6

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Jervell and Lange-Nielsen syndrome

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Jervell and Lange-Nielsen syndrome (JLNS) is characterized by congenital profound bilateral sensorineural hearing loss and long QTc, usually greater than 500 msec. Prolongation of the QTc interval is associated with tachyarrhythmias, including ventricular tachycardia, episodes of torsade de pointes ventricular tachycardia, and ventricular fibrillation, which may culminate in syncope or sudden death. The classic presentation of JLNS is a deaf child who experiences syncopal episodes during periods of stress, exercise, or fright. Fifty percent of individuals with JLNS had cardiac events before age three years. More than half of untreated children with JLNS die prior to age 15 years.
    Diagnosis Testing
    The diagnosis of JLNS is established in a child with congenital sensorineural deafness, long QT interval, and presence of two disease-causing mutations in either KCNQ1 or KCNE1, the only two genes known to be associated with JLNS. Such molecular genetic testing is clinically available.
    Genetic Counseling
    JLNS is inherited in an autosomal recessive manner. Parents of a child with JLNS are usually heterozygotes; rarely, only one parent is a carrier and the other mutation is de novo. Parents may or may not have the long QT syndrome (LQTS) phenotype. At conception, each sib of an affected individual usually has a 25% chance of being affected with JLNS, a 50% chance of being a carrier of a JLNS disease-causing mutation and at risk for LQTS, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References

    Jervell and Lange-Nielsen syndrome 2

    Long QT syndrome 2/5

    Long QT syndrome-5

    Several common variants modulate heart rate, PR interval and QRS duration.

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    P15382 Q12809 KCNH2    HPRD  PubMed  
    P15382 P51787 KCNQ1    HPRD  PubMed  
    P15382 P17252 PRKCA    HPRD  PubMed  
    BioGRID:109955 BioGRID:109959 KCNH2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109955 BioGRID:109985 KCNQ1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to delayed rectifier potassium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    potassium channel regulator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    voltage-gated ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    blood circulation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    epithelial cell maturation IEA
    Inferred from Electronic Annotation
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    membrane depolarization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    muscle contraction TAS
    Traceable Author Statement
    more info
    PubMed 
    potassium ion export IDA
    Inferred from Direct Assay
    more info
    PubMed 
    potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of heart contraction IC
    Inferred by Curator
    more info
    PubMed 
    sensory perception of sound TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    voltage-gated potassium channel complex IC
    Inferred by Curator
    more info
    PubMed 

    General protein information

    Preferred Names
    potassium voltage-gated channel subfamily E member 1
    Names
    potassium voltage-gated channel subfamily E member 1
    minimal potassium channel
    delayed rectifier potassium channel subunit IsK
    voltage gated potassiun channel accessory subunit
    cardiac delayed rectifier potassium channel protein
    potassium voltage-gated channel, Isk-related subfamily, member 1
    IKs producing slow voltage-gated potassium channel subunit beta Mink

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009091.1 RefSeqGene

      Range
      5001..69626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_290

    mRNA and Protein(s)

    1. NM_000219.3NP_000210.2  potassium voltage-gated channel subfamily E member 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
      Source sequence(s)
      AF135188, AP000324, BC046224, CD370857
      Consensus CDS
      CCDS13636.1
      UniProtKB/TrEMBL
      C7S316
      UniProtKB/Swiss-Prot
      P15382
      UniProtKB/TrEMBL
      Q6FHJ6
      Related
      ENSP00000337255, ENST00000337385
      Conserved Domains (1) summary
      pfam02060
      Location:1129
      Blast Score: 674
      ISK_Channel; Slow voltage-gated potassium channel
    2. NM_001127668.1NP_001121140.1  potassium voltage-gated channel subfamily E member 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
      Source sequence(s)
      AF135188, AP000324, BC036452, BC046224, CD370857
      Consensus CDS
      CCDS13636.1
      UniProtKB/TrEMBL
      C7S316
      UniProtKB/Swiss-Prot
      P15382
      UniProtKB/TrEMBL
      Q6FHJ6
      Related
      ENSP00000412498, ENST00000432085
      Conserved Domains (1) summary
      pfam02060
      Location:1129
      Blast Score: 674
      ISK_Channel; Slow voltage-gated potassium channel
    3. NM_001127669.1NP_001121141.1  potassium voltage-gated channel subfamily E member 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
      Source sequence(s)
      AF135188, AP000324, BC036452, BC046224, CD370857
      Consensus CDS
      CCDS13636.1
      UniProtKB/TrEMBL
      C7S316
      UniProtKB/Swiss-Prot
      P15382
      UniProtKB/TrEMBL
      Q6FHJ6
      Related
      ENSP00000382228, OTTHUMP00000108623, ENST00000399289, OTTHUMT00000194151
      Conserved Domains (1) summary
      pfam02060
      Location:1129
      Blast Score: 674
      ISK_Channel; Slow voltage-gated potassium channel
    4. NM_001127670.1NP_001121142.1  potassium voltage-gated channel subfamily E member 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3 and 4 encode the same protein.
      Source sequence(s)
      AF135188, AP000324, BC046224, CD370857, DB089177
      Consensus CDS
      CCDS13636.1
      UniProtKB/TrEMBL
      C7S316
      UniProtKB/Swiss-Prot
      P15382
      UniProtKB/TrEMBL
      Q6FHJ6
      Related
      ENSP00000416258, OTTHUMP00000108625, ENST00000416357, OTTHUMT00000194153
      Conserved Domains (1) summary
      pfam02060
      Location:1129
      Blast Score: 674
      ISK_Channel; Slow voltage-gated potassium channel

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000021.8 Reference GRCh37.p5 Primary Assembly

      Range
      35818988..35883613, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000153.1 Alternate HuRef

      Range
      21297859..21362484, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AP000323.1 None
    genomic AP000324.1 (213..41301) None
    genomic AP000325.1 None
    genomic AP000326.1 None
    genomic CH471079.2 EAX09783.1
    genomic DQ784803.1 ABQ01238.1
    genomic EF514881.1 ABS84249.1
    genomic L33815.1 AAA63905.1
    genomic M26685.1 AAA36129.1
    mRNA AF135188.1 AAD25096.1
    mRNA AK095442.1 None
    mRNA AK304336.1 BAG65181.1
    mRNA AK311384.1 None
    mRNA AK313543.1 BAG36319.1
    mRNA AY789479.1 AAX11417.1
    mRNA AY789480.1 AAX11418.1
    mRNA BC036452.1 AAH36452.1
    mRNA BC046224.1 AAH46224.1
    mRNA BC069055.1 None
    mRNA CD370857.1 None
    mRNA CR541756.1 CAG46556.1
    mRNA DB089177.1 None
    mRNA EF514882.1 ABS84250.1
    mRNA EF514883.1 ABS84251.1
    mRNA EU008568.1 ABS31132.1
    mRNA EU008569.1 ABS31133.1
    mRNA EU008570.1 ABS31134.1
    mRNA L28168.1 AAA58418.1
    other-genetic JF432567.1 ADZ15784.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15382.1 GenPept UniProtKB/Swiss-Prot:P15382
    Q5DI96 GenPept UniProtKB/TrEMBL:Q5DI96
    Q6FHJ6 GenPept UniProtKB/TrEMBL:Q6FHJ6

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