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    ARF1 ADP-ribosylation factor 1 [ Homo sapiens ]

    Gene ID: 375, updated on 11-May-2012

    Summary

    Official Symbol
    ARF1provided by HGNC
    Official Full Name
    ADP-ribosylation factor 1provided by HGNC
    Primary source
    HGNC:652
    See related
    Ensembl:ENSG00000143761; HPRD:00054; MIM:103180; Vega:OTTHUMG00000037595
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    ADP-ribosylation factor 1 (ARF1) is a member of the human ARF gene family. The family members encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking as activators of phospholipase D. The gene products, including 6 ARF proteins and 11 ARF-like proteins, constitute a family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1, ARF2 and ARF3), class II (ARF4 and ARF5) and class III (ARF6), and members of each class share a common gene organization. The ARF1 protein is localized to the Golgi apparatus and has a central role in intra-Golgi transport. Multiple alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    1q42
    Sequence :
    Chromosome: 1; NC_000001.10 (228270361..228286913)
    See ARF1 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 3A Neighboring gene uncharacterized LOC100506571 Neighboring gene microRNA 3620 Neighboring gene chromosome 1 open reading frame 35 Neighboring gene mitochondrial ribosomal protein L55

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Nef nef Nef binds GTPase ARF1 directly via residues E154 and E155 and recruits the GTPase to endosomal membranes PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NM_001658.2 NP_059346.1 STAU1    BIND  PubMed Stau1 interacts with Arf1. 
    NP_001019398.1     BIND  PubMed Arf1 interacts and hydrolyzes GTP. This interaction was modelled on a demonstrated interaction between Arf1 from an unspecified species and GTP. 
    NP_001649.1     BIND  PubMed Arf-1 interacts with GTP. This interaction was modelled on a demonstrated interaction between bovine Arf1 and GTP. 
    P84077 Q10567 AP1B1    HPRD  PubMed  
    P84077 O43747 AP1G1    HPRD  PubMed  
    P84077 O00203 AP3B1    HPRD  PubMed  
    P84077 O14617 AP3D1    HPRD  PubMed  
    P84077 Q9UPM8 AP4E1    HPRD  PubMed  
    P84077 O00189 AP4M1    HPRD  PubMed  
    P84077 P84077 ARF1    HPRD  PubMed  
    P84077 Q8N6T3 ARFGAP1    HPRD  PubMed  
    P84077 P53367 ARFIP1    HPRD  PubMed  
    P84077 P53365 ARFIP2    HPRD  PubMed  
    P84077 Rho GTPase activating protein 10 ARHGAP21    HPRD  PubMed  
    P84077 Q9ULH1 ASAP1    HPRD  PubMed  
    P84077 O43150 ASAP2    HPRD  PubMed  
    P84077 P20309 CHRM3    HPRD  PubMed  
    P84077 P53618 COPB1    HPRD  PubMed  
    P84077 O14579 COPE    HPRD  PubMed  
    P84077 Q9Y678 COPG1    HPRD  PubMed  
    P84077 Q15438 CYTH1    HPRD  PubMed  
    P84077 Q99418 CYTH2    HPRD  PubMed  
    P84077 P26641 EEF1G    HPRD  PubMed  
    P84077 Q9UJY5 GGA1    HPRD  PubMed  
    P84077 Q9UJY4 GGA2    HPRD  PubMed  
    P84077 Q9NZ52 GGA3    HPRD  PubMed  
    P84077 O14653 GOSR2    HPRD  PubMed  
    P84077 P06213 INSR    HPRD  PubMed  
    P84077 P24390 KDELR1    HPRD  PubMed  
    P84077 O15151 MDM4    HPRD  PubMed  
    P84077 Q8NC60 NOA1    HPRD  PubMed  
    P84077 P06748 NPM1    HPRD  PubMed  
    P84077 Q9NRD5 PICK1    HPRD  PubMed  
    P84077 Q99755 PIP5K1A    HPRD  PubMed  
    P84077 Q13393 PLD1    HPRD  PubMed  
    P84077 O14939 PLD2    HPRD  PubMed  
    P84077 Phosphoinositol 4 phosphate adaptor protein 2 PLEKHA8    HPRD  PubMed  
    P84077 Q99541 PLIN2    HPRD  PubMed  
    P84077 P11233 RALA    HPRD  PubMed  
    P84077 P49755 TMED10    HPRD  PubMed  
    P84077 Q15363 TMED2    HPRD  PubMed  
    P84077 Q9Y2W2 WBP11    HPRD  PubMed  
    BioGRID:106870 BioGRID:229294 2810046L04Rik    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106870 BioGRID:223223 AI837181    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106870 BioGRID:106671 AP1B1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:106673 AP1G1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:115533 AP3S2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:116999 AP4E1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:106870 BioGRID:114616 AP4M1    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:106870 ARF1    BioGRID  PubMed Co-crystal Structure 
    BioGRID:106870 BioGRID:118084 ARFIP1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:117174 ARFIP2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:198294 Bach1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106870 BioGRID:107553 CHRM3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:106870 BioGRID:107710 COPB1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:106870 BioGRID:116447 COPE    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:116496 COPG1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:106870 BioGRID:114687 CYTH2    BioGRID  PubMed Biochemical Activity 
    BioGRID:106870 BioGRID:108257 EEF1G    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:31884 GCS1    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:33784 GEA1    BioGRID  PubMed Co-crystal Structure 
    BioGRID:106870 BioGRID:117540 GGA1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:116775 GGA3    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:106870 BioGRID:36866 GLO3    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:116145 KDELR1    BioGRID  PubMed FRET 
    BioGRID:106870 BioGRID:200937 Kif1c    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106870 BioGRID:124000 NOA1    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:111033 OPRM1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:106870 BioGRID:111353 PLD1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:106870 BioGRID:111354 PLD2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:111834 RALA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:106870 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106870 BioGRID:119702 WBP11    BioGRID  PubMed Two-hybrid 
    BioGRID:106870 BioGRID:1205545 nef    BioGRID  PubMed Affinity Capture-Western 

    General gene information

    Markers

    Homology

    • Homologs of the ARF1 gene: The ARF1 gene is conserved in chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, rice, and P.falciparum.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    • Arf1 pathway, organism-specific biosystem (from Pathway Interaction Database)
      Arf1 pathway, organism-specific biosystem
      Arf1 pathway
    • Arf6 downstream pathway, organism-specific biosystem (from Pathway Interaction Database)
      Arf6 downstream pathway, organism-specific biosystem
      Arf6 downstream pathway
    • COPI Mediated Transport, organism-specific biosystem (from REACTOME)
      COPI Mediated Transport, organism-specific biosystemSecretory transport depends on membrane-bounded carriers to move protein and lipid between intracellular compartments. The COPI coat has a central role in this process, creating a sorting domain on t...
    • Class I PI3K signaling events, organism-specific biosystem (from Pathway Interaction Database)
      Class I PI3K signaling events, organism-specific biosystem
      Class I PI3K signaling events
    • Clathrin derived vesicle budding, organism-specific biosystem (from REACTOME)
      Clathrin derived vesicle budding, organism-specific biosystemThere at least two classes of clathrin coated vesicles in cells, one predominantly Golgi-associated, involved in budding from the trans-Golgi network and the other at the plasma membrane. Here the cl...
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • Golgi Associated Vesicle Biogenesis, organism-specific biosystem (from REACTOME)
      Golgi Associated Vesicle Biogenesis, organism-specific biosystemProteins that have been synthesized, processed and sorted eventually reach the final steps of the secretory pathway. This pathway is responsible not only for proteins that are secreted from the cell ...
    • Golgi to ER Retrograde Transport, organism-specific biosystem (from REACTOME)
      Golgi to ER Retrograde Transport, organism-specific biosystemThe anterograde membrane flow from the ER to the Golgi is compensated for by a retrograde pathway. This pathway's functions include the recycling of membrane and proteins to the ER.
    • HIV Infection, organism-specific biosystem (from REACTOME)
      HIV Infection, organism-specific biosystemThe global pandemic of Human Immunodeficiency Virus (HIV) infection has resulted in tens of millions of people infected by the virus and millions more affected. UNAIDS estimates around 40 million ...
    • Host Interactions of HIV factors, organism-specific biosystem (from REACTOME)
      Host Interactions of HIV factors, organism-specific biosystemLike all viruses, HIV-1 must co-opt the host cell macromolecular transport and processing machinery. HIV-1 Vpr and Rev proteins play key roles in this co-optation. Efficient HIV-1 replication likewis...
    • Insulin Signaling, organism-specific biosystem (from WikiPathways)
      Insulin Signaling, organism-specific biosystem
      Insulin Signaling
    • Legionellosis, organism-specific biosystem (from KEGG)
      Legionellosis, organism-specific biosystemLegionellosis is a potentially fatal infectious disease caused by the bacterium Legionella pneumophila and other legionella species. Two distinct clinical and epidemiological syndromes are associated...
    • Legionellosis, conserved biosystem (from KEGG)
      Legionellosis, conserved biosystemLegionellosis is a potentially fatal infectious disease caused by the bacterium Legionella pneumophila and other legionella species. Two distinct clinical and epidemiological syndromes are associated...
    • Lysosome Vesicle Biogenesis, organism-specific biosystem (from REACTOME)
      Lysosome Vesicle Biogenesis, organism-specific biosystemProteins that have been synthesized, processed and sorted eventually reach the final steps of the secretory pathway. This pathway is responsible not only for proteins that are secreted from the cell ...
    • Membrane Trafficking, organism-specific biosystem (from REACTOME)
      Membrane Trafficking, organism-specific biosystemThe secretory membrane system allows a cell to regulate delivery of newly synthesized proteins, carbohydrates, and lipids to the cell surface, a necessity for growth and homeostasis. The system is ma...
    • Nef Mediated CD4 Down-regulation, organism-specific biosystem (from REACTOME)
      Nef Mediated CD4 Down-regulation, organism-specific biosystemThe presence of Nef accelerates endocytosis and lysosomal degradation of the transmembrane glycoprotein CD4. CD4 has its own internalization motif, though this motif is normally concealed by CD4 inte...
    • Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters, organism-specific biosystem (from REACTOME)
      Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters, organism-specific biosystemThe maximal virulence of HIV-1 requires Nef, a virally encoded peripheral membrane protein. Nef binds to the adaptor protein (AP) complexes of coated vesicles, inducing an expansion of the endosomal ...
    • The role of Nef in HIV-1 replication and disease pathogenesis, organism-specific biosystem (from REACTOME)
      The role of Nef in HIV-1 replication and disease pathogenesis, organism-specific biosystemThe HIV-1 Nef protein is a 27-kDa myristoylated protein that is abundantly produced during the early phase of viral replication cycle. It is highly conserved in all primate lentiviruses, suggesting t...
    • Vibrio cholerae infection, organism-specific biosystem (from KEGG)
      Vibrio cholerae infection, organism-specific biosystemCholera toxin (CTX) is one of the main virulence factors of Vibrio cholerae. Once secreted, CTX B-chain (CTXB) binds to ganglioside GM1 on the surface of the host's cells. After binding takes place, ...
    • Vibrio cholerae infection, conserved biosystem (from KEGG)
      Vibrio cholerae infection, conserved biosystemCholera toxin (CTX) is one of the main virulence factors of Vibrio cholerae. Once secreted, CTX B-chain (CTXB) binds to ganglioside GM1 on the surface of the host's cells. After binding takes place, ...
    • trans-Golgi Network Vesicle Budding, organism-specific biosystem (from REACTOME)
      trans-Golgi Network Vesicle Budding, organism-specific biosystemAfter passing through the Golgi complex, secretory cargo is packaged into post-Golgi transport intermediates (post-Golgi), which translocate plus-end directed along microtubules to the plasma membran...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    GTPase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    receptor signaling protein activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    COPI coating of Golgi vesicle TAS
    Traceable Author Statement
    more info
     
    GTP catabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    cellular copper ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
     
    cellular membrane organization TAS
    Traceable Author Statement
    more info
     
    post-Golgi vesicle-mediated transport TAS
    Traceable Author Statement
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of defense response to virus by virus TAS
    Traceable Author Statement
    more info
     
    retrograde vesicle-mediated transport, Golgi to ER TAS
    Traceable Author Statement
    more info
     
    small GTPase mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi membrane TAS
    Traceable Author Statement
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    sarcomere IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor 1
    Names
    ADP-ribosylation factor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024226.1NP_001019397.1  ADP-ribosylation factor 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) has an alternate and shorter 5' UTR, as compared to variant 1.
      Source sequence(s)
      AK000620, BF337061, BM844480
      Consensus CDS
      CCDS1565.1
      UniProtKB/Swiss-Prot
      P84077
      Related
      ENSP00000442980, ENST00000540651
      Conserved Domains (1) summary
      cd04150
      Location:18176
      Blast Score: 915
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)
    2. NM_001024227.1NP_001019398.1  ADP-ribosylation factor 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK000620, BF337061, BG421840, BQ935470
      Consensus CDS
      CCDS1565.1
      UniProtKB/Swiss-Prot
      P84077
      Related
      ENSP00000440005, ENST00000541182
      Conserved Domains (1) summary
      cd04150
      Location:18176
      Blast Score: 915
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)
    3. NM_001024228.1NP_001019399.1  ADP-ribosylation factor 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks a segment in the 5' UTR, as compared to variant 1.
      Source sequence(s)
      AK000620, BF337061, BM353046, BQ949763
      Consensus CDS
      CCDS1565.1
      UniProtKB/Swiss-Prot
      P84077
      Conserved Domains (1) summary
      cd04150
      Location:18176
      Blast Score: 915
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)
    4. NM_001658.3NP_001649.1  ADP-ribosylation factor 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) has an alternate and shorter 5' UTR, as compared to variant 1.
      Source sequence(s)
      AK000620, BF337061
      Consensus CDS
      CCDS1565.1
      UniProtKB/Swiss-Prot
      P84077
      Related
      ENSP00000272102, OTTHUMP00000035715, ENST00000272102, OTTHUMT00000091650
      Conserved Domains (1) summary
      cd04150
      Location:18176
      Blast Score: 915
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p5 Primary Assembly

      Range
      228270361..228286913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      198785590..198802034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL136379.19 CAI23120.1
    genomic CH471098.1 EAW69831.1
      EAW69832.1
      EAW69833.1
      EAW69834.1
      EAW69835.1
      EAW69836.1
    genomic M84327.1 None
    genomic M84332.1 AAA35511.1
    mRNA AF052179.1 AAC28623.1
    mRNA AF055002.1 AAC09356.1
    mRNA AF493881.1 AAM12595.1
    mRNA AK000620.1 None
    mRNA AK057838.1 None
    mRNA AK057875.1 None
    mRNA AK130737.1 None
    mRNA AK293553.1 BAG57030.1
    mRNA AK296020.1 BAG58790.1
    mRNA AK297792.1 BAG60132.1
    mRNA BC009247.2 AAH09247.1
    mRNA BC010415.2 None
    mRNA BC010429.1 AAH10429.1
    mRNA BC011358.1 AAH11358.1
    mRNA BF337061.1 None
    mRNA BG421840.1 None
    mRNA BM353046.1 None
    mRNA BM844480.1 None
    mRNA BQ935470.1 None
    mRNA BQ949763.1 None
    mRNA BT007393.1 AAP36057.1
    mRNA M36340.1 AAA35552.1
    mRNA M84326.1 AAA35512.1
    other-genetic AM393261.1 CAL38139.1
    other-genetic AM393462.1 CAL38339.1
    other-genetic AM393595.1 CAL38472.1
    other-genetic AM393712.1 CAL38588.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P84077.2 GenPept UniProtKB/Swiss-Prot:P84077

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