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HDAC4 histone deacetylase 4 [ Gallus gallus (chicken) ]

Gene ID: 374207, updated on 6-Feb-2016
Symbol
HDAC4provided by CGNC
Full Name
histone deacetylase 4provided by CGNC
Primary source
CGNC:49084
See related
Ensembl:ENSGALG00000004288
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
See HDAC4 in MapViewer
Location:
chromosome: 7
Exon count:
30
Annotation release Status Assembly Chr Location
103 current Gallus_gallus-5.0 (GCF_000002315.4) 7 NC_006094.4 (6185003..6415782, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 7 NC_006094.3 (6214809..6433001, complement)

Chromosome 7 - NC_006094.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053775 Neighboring gene twist homolog 2 (Drosophila) Neighboring gene uncharacterized LOC107053774 Neighboring gene uncharacterized LOC107053773 Neighboring gene uncharacterized LOC107053772

  • Cell cycle, organism-specific biosystem (from WikiPathways)
    Cell cycle, organism-specific biosystem(From http://en.wikipedia.org/wiki/Cell_cycle) The cell cycle is the series of events that takes place in a cell leading to its division and duplication (replication). Regulation of the cell cycle in...
Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
Inferred from Electronic Annotation
more info
 
histone deacetylase activity TAS
Traceable Author Statement
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
B cell activation TAS
Traceable Author Statement
more info
PubMed 
B cell differentiation TAS
Traceable Author Statement
more info
PubMed 
chromatin modification TAS
Traceable Author Statement
more info
PubMed 
chromatin organization TAS
Traceable Author Statement
more info
PubMed 
histone H3 deacetylation IEA
Inferred from Electronic Annotation
more info
 
histone deacetylation TAS
Traceable Author Statement
more info
PubMed 
inflammatory response TAS
Traceable Author Statement
more info
PubMed 
negative regulation of striated muscle tissue development TAS
Traceable Author Statement
more info
PubMed 
negative regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
nervous system development TAS
Traceable Author Statement
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
histone deacetylase complex TAS
Traceable Author Statement
more info
PubMed 
Preferred Names
histone deacetylase 4
Names
HD4
NP_989644.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204313.1NP_989644.1  histone deacetylase 4

    See identical proteins and their annotated locations for NP_989644.1

    Status: PROVISIONAL

    Source sequence(s)
    AB052839
    UniProtKB/Swiss-Prot
    P83038
    Related
    ENSGALP00000033098, ENSGALT00000033739
    Conserved Domains (2) summary
    cd10162
    Location:91151
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6451053
    HDAC4; Histone deacetylase 4

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gallus_gallus-5.0 Primary Assembly

Genomic

  1. NC_006094.4 Reference Gallus_gallus-5.0 Primary Assembly

    Range
    6185003..6415782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015289092.1XP_015144578.1  

    Conserved Domains (2) summary
    cd10162
    Location:91152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6511059
    HDAC4; Histone deacetylase 4
  2. XM_015289094.1XP_015144580.1  

    Conserved Domains (2) summary
    cd10162
    Location:91151
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6451053
    HDAC4; Histone deacetylase 4
  3. XM_015289091.1XP_015144577.1  

    Conserved Domains (2) summary
    cd10162
    Location:106166
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6601068
    HDAC4; Histone deacetylase 4
  4. XM_015289096.1XP_015144582.1  

    Conserved Domains (2) summary
    cd10162
    Location:106167
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6591067
    HDAC4; Histone deacetylase 4
  5. XM_015289088.1XP_015144574.1  

    Conserved Domains (2) summary
    cd10162
    Location:106166
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6651073
    HDAC4; Histone deacetylase 4
  6. XM_015289089.1XP_015144575.1  

    Conserved Domains (2) summary
    cd10162
    Location:106167
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6641072
    HDAC4; Histone deacetylase 4
  7. XM_015289090.1XP_015144576.1  

    Conserved Domains (2) summary
    cd10162
    Location:106167
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6611069
    HDAC4; Histone deacetylase 4
  8. XM_015289087.1XP_015144573.1  

    Conserved Domains (2) summary
    cd10162
    Location:106167
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6661074
    HDAC4; Histone deacetylase 4
  9. XM_015289095.1XP_015144581.1  

    Conserved Domains (2) summary
    cd10162
    Location:64125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6241032
    HDAC4; Histone deacetylase 4
  10. XM_015289093.1XP_015144579.1  

    Conserved Domains (2) summary
    cd10162
    Location:91152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:6511059
    HDAC4; Histone deacetylase 4