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    CG9418 [ Drosophila melanogaster ]

    Gene ID: 37407, updated on 9-May-2012
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    Summary

    Official Symbol
    CG9418provided by Flybase
    Primary source
    FLYBASE:FBgn0026582
    Locus tag
    Dmel_CG9418
    Gene type
    protein coding
    RNA name
    CG9418
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:LD07122; Dmel\CG9418; LD07122
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    Genomic context

    Location :
    57C4-57C4
    Sequence :
    Chromosome: 2R; NT_033778.3 (17033713..17035113)
    See CG9418 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG30388 gene product from transcript CG30388-RA Neighboring gene CG9406 gene product from transcript CG9406-RA Neighboring gene X box binding protein-1 Neighboring gene CG15657 gene product from transcript CG15657-RA Neighboring gene CG30389 gene product from transcript CG30389-RA Neighboring gene transfer RNA:CR30206

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (11) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:63042 BioGRID:67803 Apc2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:57704 CG11596    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:66246 CG11980    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:64931 CG13476    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:67667 CG13838    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:67258 CG14302    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:68044 CG14546    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:66932 CG5044    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:65342 CG6843    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:66178 CG7352    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:61972 CG7737    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:61730 CG8235    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:72882 Cct1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:63717 Cct2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:62537 JhI-26    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:58659 REG    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:63042 BioGRID:62684 RhoGAP54D    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:533679 kay    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:64676 pallidin    BioGRID  PubMed Two-hybrid 
    BioGRID:63042 BioGRID:67464 r-l    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    Homology

    • Homologs of the CG9418 gene: The CG9418 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, and mosquito.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG9418 gene product from transcript CG9418-RA
    Names
    CG9418
    CG9418-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      17033713..17035113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137709.3 → NP_611553.1  CG9418 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W2K8
      Related
      FBpp0071501, FBtr0071573
      Conserved Domains (2) summary
      cd01390
      Location:76 – 141
      Blast Score: 148
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
      pfam06156
      Location:268 – 317
      Blast Score: 79
      DUF972; Protein of unknown function (DUF972)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY058722.1 AAL13951.1
    genomic AE013599.4 AAF46682.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W2K8.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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