These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001656.3 → NP_001647.1 E3 ubiquitin-protein ligase TRIM23 isoform alpha
Status: REVIEWED
- Description
- Transcript Variant: This variant (alpha) encodes the longest isoform. It has a unique C-terminus compared to isoforms beta and gamma of this protein.
- Source sequence(s)
-
BC022510, BI859501, L04510
- Consensus CDS
-
CCDS3987.1
- UniProtKB/Swiss-Prot
-
P36406
- Related
- ENSP00000231524, OTTHUMP00000123452, ENST00000231524, OTTHUMT00000215058
- Conserved Domains (6) summary
-
- cd00021
Location:126 – 168
Blast Score: 88
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- smart00502
Location:226 – 370
Blast Score: 257
- BBC; B-Box C-terminal domain
- cd04158
Location:406 – 574
Blast Score: 898
- ARD1; (ADP-ribosylation factor domain protein 1 (ARD1)
- cl00034
Location:173 – 219
Blast Score: 89
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cl02600
Location:288 – 347
Blast Score: 85
- HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
- cl15348
Location:31 – 74
Blast Score: 92
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
NM_033227.2 → NP_150230.1 E3 ubiquitin-protein ligase TRIM23 isoform beta
Status: REVIEWED
- Description
- Transcript Variant: This variant (beta) is alternatively spliced near the 3' end of the coding region. This introduces a frameshift and the encoded isoform beta has a unique C-terminus compared to isoforms alpha and gamma.
- Source sequence(s)
-
AF230398, BC022510, BI859501
- Consensus CDS
-
CCDS43322.1
- UniProtKB/Swiss-Prot
-
P36406
- Related
- ENSP00000370406, OTTHUMP00000222562, ENST00000381018, OTTHUMT00000370125
- Conserved Domains (6) summary
-
- cd00021
Location:126 – 168
Blast Score: 87
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- smart00502
Location:226 – 370
Blast Score: 254
- BBC; B-Box C-terminal domain
- cl00034
Location:173 – 219
Blast Score: 88
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cl02600
Location:288 – 347
Blast Score: 85
- HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
- cl15348
Location:31 – 74
Blast Score: 90
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl09099
Location:406 – 550
Blast Score: 775
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
NM_033228.2 → NP_150231.1 E3 ubiquitin-protein ligase TRIM23 isoform gamma
Status: REVIEWED
- Description
- Transcript Variant: This variant (gamma) is alternatively spliced near the 3' end of the coding region. This introduces a frameshift and the encoded isoform gamma has a unique C-terminus compared to isoforms alpha and beta.
- Source sequence(s)
-
AF230399, BC022510, BI859501
- Consensus CDS
-
CCDS3986.1
- UniProtKB/Swiss-Prot
-
P36406
- Related
- ENSP00000274327, OTTHUMP00000123453, ENST00000274327, OTTHUMT00000215059
- Conserved Domains (5) summary
-
- smart00502
Location:226 – 370
Blast Score: 253
- BBC; B-Box C-terminal domain
- cl00034
Location:126 – 168
Blast Score: 86
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cl02600
Location:288 – 347
Blast Score: 86
- HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
- cl15348
Location:31 – 74
Blast Score: 89
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl09099
Location:406 – 540
Blast Score: 712
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000005.9 Reference GRCh37.p5 Primary Assembly
- Range
- 64885507..64920187, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000137.1 Alternate HuRef
- Range
- 61841543..61876240, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)