These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_009090.1 RefSeqGene
- Range
- 5001..37106
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_002230.2 → NP_002221.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
-
P14923
- Related
- ENSP00000377508, OTTHUMP00000164738, ENST00000393931, OTTHUMT00000257406
- Conserved Domains (2) summary
-
- cd00020
Location:220 – 339
Blast Score: 165
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- cd00256
Location:73 – 242
Blast Score: 89
- VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
-
NM_021991.2 → NP_068831.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate segment in the 3' UTR, compared to transcript variant 1. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
-
P14923
- Related
- ENSP00000311113, OTTHUMP00000164732, ENST00000310706, OTTHUMT00000257399
- Conserved Domains (2) summary
-
- cd00020
Location:220 – 339
Blast Score: 165
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- cd00256
Location:73 – 242
Blast Score: 89
- VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000017.10 Reference GRCh37.p5 Primary Assembly
- Range
- 39910859..39942964, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p5 PATCHES
Genomic
-
NW_003571052.1 Reference GRCh37.p5 PATCHES
- Range
- 41249..73354, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000149.1 Alternate HuRef
- Range
- 35672969..35704921, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)