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tbp TATA box binding protein [ Danio rerio (zebrafish) ]

Gene ID: 368882, updated on 7-May-2016
Official Symbol
tbpprovided by ZNC
Official Full Name
TATA box binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-563
See related
Ensembl:ENSDARG00000014994 Vega:OTTDARG00000018237
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fd20h06; zgc:66213; wu:fd20h06; si:zc101n13.2
Orthologs
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 13 NC_007124.6 (24253719..24265508, complement)
103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (24608059..24619848, complement)

Chromosome 13 - NC_007124.6Genomic Context describing neighboring genes Neighboring gene ras homolog family member Ua Neighboring gene programmed cell death 2 Neighboring gene zgc:153169 Neighboring gene RAB1A, member RAS oncogene family b Neighboring gene centrosomal protein 68

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
DNA-templated transcription, initiation IEA
Inferred from Electronic Annotation
more info
 
DNA-templated transcription, initiation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
gastrulation IEA
Inferred from Electronic Annotation
more info
 
gastrulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
TATA-box-binding protein
Names
tbp

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200096.1NP_956390.1  TATA-box-binding protein

    See identical proteins and their annotated locations for NP_956390.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055549
    UniProtKB/Swiss-Prot
    Q7SXL3
    Related
    ENSDARP00000010211, OTTDARP00000018529, ENSDART00000016211, OTTDART00000022068
    Conserved Domains (2) summary
    PLN00062
    Location:125301
    PLN00062; TATA-box-binding protein; Provisional
    cd04516
    Location:125298
    TBP_eukaryotes; eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007124.6 Reference GRCz10 Primary Assembly

    Range
    24253719..24265508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)