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Atg5 autophagy related 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 365601, updated on 26-May-2016
Official Symbol
Atg5provided by RGD
Official Full Name
autophagy related 5provided by RGD
Primary source
RGD:1359580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Annotation information
Annotation category: partial on reference assembly
Orthologs
Location:
20q13
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (49301783..49393147)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 20 NC_005119.3 (50934688..51026125)

Chromosome 20 - NC_005119.4Genomic Context describing neighboring genes Neighboring gene similar to heat shock protein 8 Neighboring gene uncharacterized LOC102554815 Neighboring gene uncharacterized LOC103694449 Neighboring gene uncharacterized LOC103694450 Neighboring gene uncharacterized LOC102554933

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
contributes_to Atg8 ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
C-terminal protein lipidation IBA
Inferred from Biological aspect of Ancestor
more info
 
aggrephagy ISO
Inferred from Sequence Orthology
more info
 
antigen processing and presentation of endogenous antigen IEA
Inferred from Electronic Annotation
more info
 
antigen processing and presentation of endogenous antigen ISO
Inferred from Sequence Orthology
more info
 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
autophagosome assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
autophagosome assembly ISO
Inferred from Sequence Orthology
more info
 
autophagy IEA
Inferred from Electronic Annotation
more info
 
autophagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
autophagy ISO
Inferred from Sequence Orthology
more info
 
blood vessel remodeling IEA
Inferred from Electronic Annotation
more info
 
blood vessel remodeling ISO
Inferred from Sequence Orthology
more info
 
cellular homeostasis IEA
Inferred from Electronic Annotation
more info
 
cellular homeostasis ISO
Inferred from Sequence Orthology
more info
 
cellular response to nitrogen starvation IBA
Inferred from Biological aspect of Ancestor
more info
 
cellular response to nitrosative stress ISO
Inferred from Sequence Orthology
more info
 
cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 
cellular response to starvation ISO
Inferred from Sequence Orthology
more info
 
heart contraction IEA
Inferred from Electronic Annotation
more info
 
heart contraction ISO
Inferred from Sequence Orthology
more info
 
innate immune response IEA
Inferred from Electronic Annotation
more info
 
macroautophagy ISO
Inferred from Sequence Orthology
more info
 
mitophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell death ISO
Inferred from Sequence Orthology
more info
 
negative regulation of histone H4-K16 acetylation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of histone H4-K16 acetylation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of phagocytosis ISO
Inferred from Sequence Orthology
more info
 
negative regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
negative regulation of protein ubiquitination ISO
Inferred from Sequence Orthology
more info
 
negative regulation of reactive oxygen species metabolic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of reactive oxygen species metabolic process ISO
Inferred from Sequence Orthology
more info
 
negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 
negative stranded viral RNA replication ISO
Inferred from Sequence Orthology
more info
 
negative thymic T cell selection IEA
Inferred from Electronic Annotation
more info
 
negative thymic T cell selection ISO
Inferred from Sequence Orthology
more info
 
nucleophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
otolith development IEA
Inferred from Electronic Annotation
more info
 
otolith development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mitophagy IEA
Inferred from Electronic Annotation
more info
 
positive regulation of mitophagy ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mucus secretion IEA
Inferred from Electronic Annotation
more info
 
positive regulation of mucus secretion ISO
Inferred from Sequence Orthology
more info
 
post-translational protein modification ISO
Inferred from Sequence Orthology
more info
 
protein lipidation involved in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 
protein lipidation involved in autophagosome assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of cilium assembly IEA
Inferred from Electronic Annotation
more info
 
regulation of cilium assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of cilium assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cytokine secretion involved in immune response IEA
Inferred from Electronic Annotation
more info
 
regulation of cytokine secretion involved in immune response ISO
Inferred from Sequence Orthology
more info
 
regulation of reactive oxygen species metabolic process ISO
Inferred from Sequence Orthology
more info
 
regulation of release of sequestered calcium ion into cytosol IEA
Inferred from Electronic Annotation
more info
 
regulation of release of sequestered calcium ion into cytosol ISO
Inferred from Sequence Orthology
more info
 
response to drug IEA
Inferred from Electronic Annotation
more info
 
response to drug ISO
Inferred from Sequence Orthology
more info
 
response to fungus IEA
Inferred from Electronic Annotation
more info
 
response to fungus ISO
Inferred from Sequence Orthology
more info
 
vasodilation IEA
Inferred from Electronic Annotation
more info
 
vasodilation ISO
Inferred from Sequence Orthology
more info
 
ventricular cardiac muscle cell development IEA
Inferred from Electronic Annotation
more info
 
ventricular cardiac muscle cell development ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
Atg12-Atg5-Atg16 complex IBA
Inferred from Biological aspect of Ancestor
more info
 
ER-mitochondrion membrane contact site IEA
Inferred from Electronic Annotation
more info
 
ER-mitochondrion membrane contact site ISO
Inferred from Sequence Orthology
more info
 
autophagosome IEA
Inferred from Electronic Annotation
more info
 
autophagosome ISO
Inferred from Sequence Orthology
more info
 
axoneme IEA
Inferred from Electronic Annotation
more info
 
axoneme ISO
Inferred from Sequence Orthology
more info
 
axoneme ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
pre-autophagosomal structure membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
pre-autophagosomal structure membrane IEA
Inferred from Electronic Annotation
more info
 
pre-autophagosomal structure membrane ISO
Inferred from Sequence Orthology
more info
 
protein complex IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
autophagy protein 5
Names
ATG5 autophagy related 5 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014250.1NP_001014272.1  autophagy protein 5

    See identical proteins and their annotated locations for NP_001014272.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083602
    UniProtKB/TrEMBL
    Q5XIS0
    Conserved Domains (1) summary
    pfam04106
    Location:79164
    APG5; Autophagy protein Apg5

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005119.4 Reference Rnor_6.0 Primary Assembly

    Range
    49301783..49393147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000088.1 Alternate Rn_Celera

    Range
    52117260..52207732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)