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    EIF3E eukaryotic translation initiation factor 3, subunit E [ Homo sapiens (human) ]

    Gene ID: 3646, updated on 14-May-2013
    Official Symbol
    EIF3Eprovided by HGNC
    Official Full Name
    eukaryotic translation initiation factor 3, subunit Eprovided by HGNC
    Primary source
    HGNC:3277
    See related
    Ensembl:ENSG00000104408; HPRD:03734; MIM:602210; Vega:OTTHUMG00000164858
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    INT6; EIF3S6; EIF3-P48; eIF3-p46
    Location :
    8q22-q23
    Sequence :
    Chromosome: 8; NC_000008.10 (109213972..109260959, complement)
    See EIF3E in Epigenomics, MapViewer

    Chromosome 8 - NC_000008.10Genomic Context describing neighboring genes Neighboring gene R-spondin 2 Neighboring gene nuclear receptor binding factor 2 pseudogene 4 Neighboring gene aurora kinase B pseudogene 1 Neighboring gene ribosomal protein S17 pseudogene 14 Neighboring gene ER membrane protein complex subunit 2

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Protein Gene Interaction Pubs
    pol gag-pol HIV-1 PR is identified to have a physical interaction with eukaryotic translation initiation factor 3, subunit E (EIF3E) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
    gag-pol HIV-1 Pol is identified to have a physical interaction with eukaryotic translation initiation factor 3, subunit E (EIF3E) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    NP_001559.1 NP_057864.1 tax    BIND  PubMed Tax interacts with Int6. 
    P60228 Q7L5N1 COPS6    HPRD  PubMed  
    P60228 Q9UBW8 COPS7A    HPRD  PubMed  
    P60228 Q9H9Q2 COPS7B    HPRD  PubMed  
    P60228 Q99627 COPS8    HPRD  PubMed  
    P60228 Q9GZR7 DDX24    HPRD  PubMed  
    P60228 Q99613 EIF3C    HPRD  PubMed  
    P60228 Q9Y262 EIF3L    HPRD  PubMed  
    P60228 Q9NRA8 EIF4ENIF1    HPRD  PubMed  
    P60228 Q99814 EPAS1    HPRD  PubMed  
    P60228 O43292 GPAA1    HPRD  PubMed  
    P60228 GC-rich promoter binding protein 1-like 1 GPBP1L1    HPRD  PubMed  
    P60228 P54257 HAP1    HPRD  PubMed  
    P60228 P09914 IFIT1    HPRD  PubMed  
    P60228 Q92597 NDRG1    HPRD  PubMed  
    P60228 P46459 NSF    HPRD  PubMed  
    P60228 P48634 PRRC2A    HPRD  PubMed  
    P60228 O15483 RUNDC3A    HPRD  PubMed  
    P60228 O15198 SMAD9    HPRD  PubMed  
    P60228 P14373 TRIM27    HPRD  PubMed  
    BioGRID:109857 BioGRID:106962 ATM    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:109857 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:107670 CNTF    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114729 COPS2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:116176 COPS6    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:109857 BioGRID:107835 CSN3    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:109857 BioGRID:107998 DCC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:109857 BioGRID:121353 DDX24    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:108020 DDX3X    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:109857 BioGRID:119327 DYNC1LI1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:115578 EIF1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114210 EIF3A    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation; Co-purification 
    BioGRID:109857 BioGRID:114211 EIF3B    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation 
    BioGRID:109857 BioGRID:114212 EIF3C    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:609110 EIF3CL    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114213 EIF3D    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation 
    BioGRID:109857 BioGRID:109857 EIF3E    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114214 EIF3F    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:114215 EIF3G    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:114216 EIF3H    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:114217 EIF3I    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:114218 EIF3J    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:118148 EIF3K    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:119516 EIF3L    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:109857 BioGRID:115743 EIF3M    BioGRID  PubMed Co-fractionation 
    BioGRID:109857 BioGRID:199415 Eif3a    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:120581 FBXW7    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:108621 FN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:108964 GJA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:115671 GNB2L1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114271 GPAA1    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:121896 GPBP1L1    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:114480 HAP1    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:109659 IFIT1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:203205 Itsn2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:116947 LARP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:114879 MAGED1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:110757 NAP1L4    BioGRID  PubMed Co-fractionation 
    BioGRID:109857 BioGRID:113841 NCOA3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:115669 NDRG1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:110929 NPM1    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:110960 NSF    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:111428 POLR2C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:113646 PRRC2A    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:111679 PSMC6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:111690 PSMD12    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:111839 RANBP2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109857 BioGRID:111929 RGS2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112118 RPS10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112120 RPS12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112136 RPS18    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112137 RPS19    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112101 RPS2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112138 RPS20    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112142 RPS23    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112144 RPS25    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112148 RPS28    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112102 RPS3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112103 RPS3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112116 RPS8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112117 RPS9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:116106 RUNDC3A    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:115573 SAP18    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112359 SHBG    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:119602 SIRT7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:110268 SMAD9    BioGRID  PubMed Two-hybrid 
    BioGRID:109857 BioGRID:121411 SMURF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:111919 TRIM27    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:109857 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Co-purification 
    BioGRID:109857 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:116077 USP20    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:113255 VCAM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:113363 YWHAE    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:1205538 gag-pol    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109857 BioGRID:1205541 tat    BioGRID  PubMed Reconstituted Complex 
    • Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S, organism-specific biosystem (from REACTOME)
      Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S, organism-specific biosystemThe cap-binding complex is constituted by the initiation factors eIF4A, eIF4G and eIF4E. First, eIF4E must be released from the inactive eIF4E:4E-BP complex. Then eIF4A interacts with eIF4G, and eIF...
    • Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
      Cap-dependent Translation Initiation, organism-specific biosystemTranslation initiation is a complex process in which the Met-tRNAi initiator, 40S, and 60S ribosomal subunits are assembled by eukaryotic initiation factors (eIFs) into an 80S ribosome at the start c...
    • Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
      Eukaryotic Translation Initiation, organism-specific biosystemInitiation of translation in the majority of eukaryotic cellular mRNAs depends on the 5'-cap (m7GpppN) and involves ribosomal scanning of the 5' untranslated region (5'-UTR) for an initiating AUG sta...
    • Formation of a pool of free 40S subunits, organism-specific biosystem (from REACTOME)
      Formation of a pool of free 40S subunits, organism-specific biosystemThe 80S ribosome dissociates into free 40S (small) and 60S (large) ribosomal subunits. Each ribosomal subunit is constituted by several individual ribosomal proteins and rRNA.
    • Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystem (from REACTOME)
      Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystemBinding of the methionyl-tRNA initiator to the active eIF2:GTP complex results in the formation of the ternary complex. Subsequently, this Met-tRNAi:eIF2:GTP (ternary) complex binds to the complex fo...
    • GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
      GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemHydrolysis of eIF2-GTP occurs after the Met-tRNAi has recognized the AUG. This reaction is catalyzed by eIF5 (or eIF5B) and is thought to cause dissociation of all other initiation factors and allow ...
    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • HIF-2-alpha transcription factor network, organism-specific biosystem (from Pathway Interaction Database)
      HIF-2-alpha transcription factor network, organism-specific biosystem
      HIF-2-alpha transcription factor network
    • Hepatitis C, organism-specific biosystem (from KEGG)
      Hepatitis C, organism-specific biosystemHepatitis C virus (HCV) is a major cause of chronic liver disease. The HCV employ several strategies to perturb host cell immunity. After invasion, HCV RNA genome functions directly as an mRNA in the...
    • Hepatitis C, conserved biosystem (from KEGG)
      Hepatitis C, conserved biosystemHepatitis C virus (HCV) is a major cause of chronic liver disease. The HCV employ several strategies to perturb host cell immunity. After invasion, HCV RNA genome functions directly as an mRNA in the...
    • L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
      L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemWhile circularization of mRNA during translation initiation is thought to contribute to an increase in the efficiency of translation, it also appears to provide a mechanism for translational silencin...
    • Metabolism of proteins, organism-specific biosystem (from REACTOME)
      Metabolism of proteins, organism-specific biosystemProtein metabolism comprises the pathways of translation, post-translational modification and protein folding.
    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • Ribosomal scanning and start codon recognition, organism-specific biosystem (from REACTOME)
      Ribosomal scanning and start codon recognition, organism-specific biosystemThe 80S ribosome bound to the mRNA moves along the mRNA molecule from its initial site to the initiation codon and forms a 48S complex, in which the initiation codon is base paired to the anticodon o...
    • Translation, organism-specific biosystem (from REACTOME)
      Translation, organism-specific biosystemProtein synthesis is accomplished through the process of translation of an mRNA sequence into a polypeptide chain. This process can be divided into three distinct stages: initiation, elongation and ...
    • Translation Factors, organism-specific biosystem (from WikiPathways)
      Translation Factors, organism-specific biosystemProtein synthesis is the ultimate step of gene expression and a key control point for regulation. In particular, it enables cells to rapidly manipulate protein production without new mRNA synthesis, ...
    • Translation initiation complex formation, organism-specific biosystem (from REACTOME)
      Translation initiation complex formation, organism-specific biosystemThe translation initiation complex forms when the 43S complex binds the mRNA that is associated with eIF4F, eIF4B and eIF4H. eIF4G in the eIF4F complex can directly contact eIF3 in the 43S complex. e...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein N-terminus binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    translation initiation factor activity IC
    Inferred by Curator
    more info
    PubMed 
    contributes_to translation initiation factor activity IC
    Inferred by Curator
    more info
    PubMed 
    contributes_to translation initiation factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
     
    gene expression TAS
    Traceable Author Statement
    more info
     
    negative regulation of translational initiation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of translational initiation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    translation TAS
    Traceable Author Statement
    more info
     
    translational initiation IC
    Inferred by Curator
    more info
    PubMed 
    translational initiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    translational initiation TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    colocalizes_with PML body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    colocalizes_with chromatin NAS
    Non-traceable Author Statement
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    eukaryotic 43S preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
     
    eukaryotic 48S preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
     
    eukaryotic translation initiation factor 3 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    eukaryotic translation initiation factor 3 complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    nucleoplasm NAS
    Non-traceable Author Statement
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    eukaryotic translation initiation factor 3 subunit E
    Names
    eukaryotic translation initiation factor 3 subunit E
    eIF-3 p48
    mammary tumor-associated protein INT6
    viral integration site protein INT-6 homolog
    eukaryotic translation initiation factor 3 subunit 6
    murine mammary tumor integration site 6 (oncogene homolog)
    eukaryotic translation initiation factor 3, subunit 6 48kDa
    eukaryotic translation initiation factor 3, subunit 6 (48kD)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001568.2NP_001559.1  eukaryotic translation initiation factor 3 subunit E

      Status: VALIDATED

      Source sequence(s)
      BG498300, U62962
      Consensus CDS
      CCDS6308.1
      UniProtKB/Swiss-Prot
      P60228
      Related
      ENSP00000220849, OTTHUMP00000227726, ENST00000220849, OTTHUMT00000380612
      Conserved Domains (2) summary
      pfam01399
      Location:292393
      Blast Score: 187
      PCI; PCI domain
      pfam09440
      Location:5138
      Blast Score: 430
      eIF3_N; eIF3 subunit 6 N terminal domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000008.10 Reference GRCh37.p10 Primary Assembly

      Range
      109213972..109260959, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000140.1 Alternate HuRef

      Range
      104535352..104582408, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018919.1 Alternate CHM1_1.0

      Range
      109491119..109538104, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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