RpS11 Ribosomal protein S11 [Drosophila melanogaster] - Gene

Help top of page

Summary

Official Symbol: RpS11provided by Flybase
Official Full Name: Ribosomal protein S11provided by Flybase
Primary source: FLYBASE:FBgn0033699
Locus tag: Dmel_CG8857
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Drosophila melanogaster
Lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as: anon-EST:fe1D2; anon-MMS23; CG8857; clone 23; Dmel\CG8857; M(2)48E; S11

Help top of page

Genomic context

Location :: 48E8-48E9

Sequence :: Chromosome: 2R; NT_033778.3 (8086524..8088333, complement)

See RpS11 in Epigenomics, MapViewer

Chromosome 2R - NT_033778.3 Genomic Context describing neighboring genes

Help top of page

Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

Help top of page

Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

Help top of page

Interactions

Products	Interactant	Other Gene	Source	Pubs	Description
BioGRID:62099	BioGRID:58700	CG11164	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:57643	CG11417	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:58273	CG12075	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:63828	CG16985	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:57784	CG2658	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:57754	CG2865	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:64510	CG3335	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:67172	CG7379	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:60254	CG8292	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:58960	CG9902	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:58246	Cp36	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:64171	D19A	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:64179	Mdr65	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:58882	PGRP-LE	BioGRID	PubMed	Affinity Capture-MS
BioGRID:62099	BioGRID:58607	Sec16	BioGRID	PubMed	Two-hybrid
BioGRID:62099	BioGRID:58911	exd	BioGRID	PubMed	Two-hybrid

Help top of page

General gene information

Homology

Homologs of the RpS11 gene: The RpS11 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, rice, and P.falciparum.

Pathways from BioSystems

Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem (from WikiPathways)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem
Cytoplasmic Ribosomal Proteins
Eukaryotic Translation Elongation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Termination, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Termination, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Peptide chain elongation, organism-specific biosystem (from REACTOME)
Peptide chain elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosomal scanning and start codon recognition, organism-specific biosystem (from REACTOME)
Ribosomal scanning and start codon recognition, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Gene Ontology Provided by FlyBase

Function	Evidence Code	Pubs
structural constituent of ribosome	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
mitotic spindle elongation	IMP Inferred from Mutant Phenotype more info	PubMed
mitotic spindle organization	IMP Inferred from Mutant Phenotype more info	PubMed
neurogenesis	IMP Inferred from Mutant Phenotype more info
translation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
cytosolic small ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info

Help top of page

General protein information

Preferred Names: CG8857 gene product from transcript CG8857-RC

Names: CG8857-PB; CG8857-PC; RpS11-PB; RpS11-PC; anon-fast-evolving-1D2; ribosomal protein S11

Help top of page

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NT_033778.3

Range

8086524..8088333, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_165868.1 → NP_725114.1 ribosomal protein S11, isoform C [Drosophila melanogaster]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0E9B6

Related

FBpp0087115, FBtr0088007

Conserved Domains (1) summary

cl00351
Location:1 – 155
Blast Score: 564

Ribosomal_S17; Ribosomal protein S17
NM_165869.2 → NP_725115.1 ribosomal protein S11, isoform B [Drosophila melanogaster]

Status: REVIEWED

UniProtKB/TrEMBL

A1Z8U9

Related

FBpp0087114, FBtr0088006

Conserved Domains (1) summary

cl00351
Location:1 – 154
Blast Score: 541

Ribosomal_S17; Ribosomal protein S17